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Author Details

Nicholas J Loman
University of Birmingham
1998
131
58
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36748435Multiplex MinION sequencing suggests enteric adenovirus F41 genetic diversity comparable to pre-COVID-19 era.Microb Genom2023
37917680APOBEC3 deaminase editing in mpox virus as evidence for sustained human transmission since at least 2016.Science2023
37255437Prevalence and Persistence of Antibiotic Resistance Determinants in the Gut of Travelers Returning to the United Kingdom is Associated with Colonization by Pathogenic Escherichia coli.Microbiol Spectr2023
37471538Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1.Science2023
37224315Rapid viral metagenomics using SMART-9N amplification and nanopore sequencing.Wellcome Open Res2023
35952712Context-specific emergence and growth of the SARS-CoV-2 Delta variant.Nature2022
35584153Molecular and genomic investigation of an urban outbreak of dengue virus serotype 2 in Angola, 2017-2019.PLoS Negl Trop Dis2022
35493740Gut Dysbiosis in Ocular Mucous Membrane Pemphigoid.Front Cell Infect Microbiol2022
35749419Shotgun metagenomic sequencing of the first case of monkeypox virus in Brazil, 2022.Rev Inst Med Trop Sao Paulo2022
36533153The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK.Virus Evol2022
33419936Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK.Science2021
33853970Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil.Science2021
33744302Details of SARS-CoV-2 reinfections at a major UK tertiary centre.J Infect2021
33628638Evaluation of full-length nanopore 16S sequencing for detection of pathogens in microbial keratitis.PeerJ2021
33539934Pseudomonas aeruginosa infection in augmented care: the molecular ecology and transmission dynamics in four large UK hospitals.J Hosp Infect2021
33932449Observations of SARS-CoV-2 variant of concern B.1.1.7 at the UK's largest hospital trust.J Infect2021
33720817Transmission, adaptation and geographical spread of the <i>Pseudomonas aeruginosa</i> Liverpool epidemic strain.Microb Genom2021
34981043Context-specific emergence and growth of the SARS-CoV-2 Delta variant.Res Sq2021
34499854Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic.Cell2021
34588460Genomic sequencing of SARS-CoV-2 in Rwanda reveals the importance of incoming travelers on lineage diversity.Nat Commun2021
34301854Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B.1.1.7 emergence.Science2021
34214859A multi-targeting pre-clinical candidate against drug-resistant tuberculosis.Tuberculosis (Edinb)2021
34210356CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance.Genome Biol2021
33275900Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity.Cell2021
32511630Coast-to-coast spread of SARS-CoV-2 in the United States revealed by genomic epidemiology.medRxiv2020
32075736Genomic and Epidemiological Surveillance of Zika Virus in the Amazon Region.Cell Rep2020
32016358A Pilot Integrative Analysis of Colonic Gene Expression, Gut Microbiota, and Immune Infiltration in Primary Sclerosing Cholangitis-Inflammatory Bowel Disease: Association of Disease With Bile Acid Pathways.J Crohns Colitis2020
31819268Author Correction: Nanopore native RNA sequencing of a human poly(A) transcriptome.Nat Methods2020
33331820Post-acute COVID-19 associated with evidence of bystander T-cell activation and a recurring antibiotic-resistant bacterial pneumonia.Elife2020
33318491Treatment of COVID-19 with remdesivir in the absence of humoral immunity: a case report.Nat Commun2020
32835323Co-infections: potentially lethal and unexplored in COVID-19.Lancet Microbe2020
32743152Anti-tubercular derivatives of rhein require activation by the monoglyceride lipase Rv0183.Cell Surf2020
32571797Identification of Common Deletions in the Spike Protein of Severe Acute Respiratory Syndrome Coronavirus 2.J Virol2020
32764827Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 - 2018.PLoS Pathog2020
32908977Improvements to the ARTIC multiplex PCR method for SARS-CoV-2 genome sequencing using nanopore.bioRxiv2020
32703910Evolution and epidemic spread of SARS-CoV-2 in Brazil.Science2020
32386545Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States.Cell2020
32359424Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China.Cell2020
32240618Screening faecal microbiota transplant donors for SARS-CoV-2 by molecular testing of stool is the safest way forward.Lancet Gastroenterol Hepatol2020
32401959Importation and early local transmission of COVID-19 in Brazil, 2020.Rev Inst Med Trop Sao Paulo2020
30621750An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar.Genome Biol2019
31719078STOP-Colitis pilot trial protocol: a prospective, open-label, randomised pilot study to assess two possible routes of faecal microbiota transplant delivery in patients with ulcerative colitis.BMJ Open2019
32123830Development of a whole-cell high-throughput phenotypic screen to identify inhibitors of mycobacterial amino acid biosynthesis.FASEB Bioadv2019
31562479Voices in methods development.Nat Methods2019
31089679Ultra-deep, long-read nanopore sequencing of mock microbial community standards.Gigascience2019
30845267Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon.PLoS Negl Trop Dis2019
30670797Reply to 'Errors in long-read assemblies can critically affect protein prediction'.Nat Biotechnol2019
29129921Towards a genomics-informed, real-time, global pathogen surveillance system.Nat Rev Genet2018
30139911Genomic and epidemiological monitoring of yellow fever virus transmission potential.Science2018
29437107Complete Closed Genome Sequence of Nontoxigenic Invasive <i>Corynebacterium diphtheriae</i> bv. mitis Strain ISS 3319.Genome Announc2018
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Collaborators

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Co-authored papers 11
Co-authored papers 9
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Co-authored papers 9
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Co-authored papers 7
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Co-authored papers 6
University of Cambridge
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Co-authored papers 4
the Scripps Research Institute
Co-authored papers 3
University of Nebraska Medical Center
Co-authored papers 3
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Co-authored papers 2
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Co-authored papers 2
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Co-authored papers 2
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Co-authored papers 2
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Co-authored papers 2
National Human Genome Research Institute, National Institutes of Health
Co-authored papers 2
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Co-authored papers 2
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Co-authored papers 2
Sandwell and West Birmingham NHS Trust
Co-authored papers 2
Sydney Institute for Infectious Diseases, The University of Sydney
Co-authored papers 2
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Co-authored papers 2
Institute of Inflammation and Ageing, University of Birmingham
Co-authored papers 2
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Institute of Molecular Systems Biology, ETH Zurich
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