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Author Details

Michele Caselle
University of Turin and INFN
1995
53
19
Antoine Forget (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37198814Emergent statistical laws in single-cell transcriptomic data.Phys Rev E2023
35267458Multiomics Topic Modeling for Breast Cancer Classification.Cancers (Basel)2022
34575116Subcellular Localization of Fad1p in <i>Saccharomyces cerevisiae</i>: A Choice at Post-Transcriptional Level?Life (Basel)2021
32986810A Model-Driven Quantitative Analysis of Retrotransposon Distributions in the Human Genome.Genome Biol Evol2020
31889184Identification of altered biological processes in heterogeneous RNA-sequencing data by discretization of expression profiles.Nucleic Acids Res2020
33339347A Topic Modeling Analysis of TCGA Breast and Lung Cancer Transcriptomic Data.Cancers (Basel)2020
32978246Genome-wide dynamics of RNA synthesis, processing, and degradation without RNA metabolic labeling.Genome Res2020
30674955Hope4Genes: a Hopfield-like class prediction algorithm for transcriptomic data.Sci Rep2019
31757202BITS2018: the fifteenth annual meeting of the Italian Society of Bioinformatics.BMC Bioinformatics2019
31693439Investigating the epi-miRNome: identification of epi-miRNAs using transfection experiments.Epigenomics2019
31247897Molecular Inverse Comorbidity between Alzheimer's Disease and Lung Cancer: New Insights from Matrix Factorization.Int J Mol Sci2019
30626100m6A-Dependent RNA Dynamics in T Cell Differentiation.Genes (Basel)2019
30048619The Epithelial-Mesenchymal Transition, as Hacked by a microRNA Combinatorial Code.Cell Syst2018
28790414Modelling the evolution of transcription factor binding preferences in complex eukaryotes.Sci Rep2017
28410145A review of computational approaches detecting microRNAs involved in cancer.Front Biosci (Landmark Ed)2017
28180313Stochastic timing in gene expression for simple regulatory strategies.Nucleic Acids Res2017
28586314MicroRNA-mediated regulatory circuits: outlook and perspectives.Phys Biol2017
27328731miR-214 and miR-148b Targeting Inhibits Dissemination of Melanoma and Breast Cancer.Cancer Res2016
26066195Ising-model description of long-range correlations in DNA sequences.Phys Rev E Stat Nonlin Soft Matter Phys2015
26639632Detection of gene communities in multi-networks reveals cancer drivers.Sci Rep2015
27305450MicroRNA-mRNA interactions underlying colorectal cancer molecular subtypes.Nat Commun2015
24639548Genome-wide activity of unliganded estrogen receptor-α in breast cancer cells.Proc Natl Acad Sci U S A2014
25339974Interplay of microRNA and epigenetic regulation in the human regulatory network.Front Genet2014
25175524Deep sequencing of the X chromosome reveals the proliferation history of colorectal adenomas.Genome Biol2014
24895546Alteration of ROS homeostasis and decreased lifespan in S. cerevisiae elicited by deletion of the mitochondrial translocator FLX1.Biomed Res Int2014
24586138A combination of transcriptional and microRNA regulation improves the stability of the relative concentrations of target genes.PLoS Comput Biol2014
23512827Molecular and morphologic characterization of superficial- and deep-subcutaneous adipose tissue subdivisions in human obesity.Obesity (Silver Spring)2013
24116768Finite-temperature behavior of glueballs in lattice gauge theories.Phys Rev Lett2013
22300320Dynamic modeling of miRNA-mediated feed-forward loops.J Comput Biol2012
23050836Gene autoregulation via intronic microRNAs and its functions.BMC Syst Biol2012
22897927The role of Transposable Elements in shaping the combinatorial interaction of Transcription Factors.BMC Genomics2012
22218456Horizontal gene transfers as metagenomic gene duplications.Mol Biosyst2012
21423718The role of incoherent microRNA-mediated feedforward loops in noise buffering.PLoS Comput Biol2011
21390222A curated database of miRNA mediated feed-forward loops involving MYC as master regulator.PLoS One2011
20365595Nucleation dynamics in two-dimensional cylindrical Ising models and chemotaxis.Phys Rev E Stat Nonlin Soft Matter Phys2010
21106075Investigating dynamic and energetic determinants of protein nucleic acid recognition: analysis of the zinc finger zif268-DNA complexes.BMC Struct Biol2010
20820472Identity and divergence of protein domain architectures after the yeast whole-genome duplication event.Mol Biosyst2010
20500026A new approach for the identification of processed pseudogenes.J Comput Biol2010
20525287Ordered structure of the transcription network inherited from the yeast whole-genome duplication.BMC Syst Biol2010
20525283Identification of functional TFAP2A and SP1 binding sites in new TFAP2A-modulated genes.BMC Genomics2010
19811654Molecular models for intrastrand DNA G-quadruplexes.BMC Struct Biol2009
19934491Entropic contributions to the splicing process.Phys Biol2009
19603121Genome-wide survey of microRNA-transcription factor feed-forward regulatory circuits in human.Mol Biosyst2009
17524134Identification of candidate regulatory sequences in mammalian 3' UTRs by statistical analysis of oligonucleotide distributions.BMC Bioinformatics2007
17930060Universal power law behaviors in genomic sequences and evolutionary models.Phys Rev E Stat Nonlin Soft Matter Phys2007
17900341Identification of DNA-binding protein target sequences by physical effective energy functions: free energy analysis of lambda repressor-DNA complexes.BMC Struct Biol2007
18053208A new computational approach to analyze human protein complexes and predict novel protein interactions.Genome Biol2007
16981993Correlated fragile site expression allows the identification of candidate fragile genes involved in immunity and associated with carcinogenesis.BMC Bioinformatics2006
15865625Ab initio identification of putative human transcription factor binding sites by comparative genomics.BMC Bioinformatics2005
15137914Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrepresented upstream motifs.BMC Bioinformatics2004
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Collaborators

Laura Cantini
Institut Pasteur, Universite Paris Cite, CNRS UMR 3738
Co-authored papers 6
Loredana Martignetti
Institut Curie, PSL Research University
Co-authored papers 3
Angela Re
Fondazione Istituto Italiano di Tecnologia
Co-authored papers 3
Emmanuel Barillot
Institut Curie, Universite PSL
Co-authored papers 2
Eugenia Galeota
Center for Genomic Science of , Istituto Italiano di Tecnologia (IIT)
Co-authored papers 2
Mattia Pelizzola
Center for Genomic Science of , Istituto Italiano di Tecnologia (IIT)
Co-authored papers 2
Enzo Medico
Candiolo Cancer Institute, Fondazione del Piemonte per l'Oncologia (FPO) - IRCCS
Co-authored papers 2
Elisabetta Moroni
Istituto di Scienze e Tecnologie Chimiche "Giulio Natta" - SCITEC CNR
Co-authored papers 2
Andrei Zinovyev
INSERM U, Institut Curie, PSL Research University
Co-authored papers 2
Martin J Lercher
Institute for Computer Science, Heinrich Heine University
Co-authored papers 1
Vera Pancaldi
Universite de Toulouse, Inserm, CNRS, Universite Toulouse III-Paul Sabatier
Co-authored papers 1
Antoine Forget (CM4AI)
University of California San Francisco
Co-authored papers 1
Alfonso Valencia
Josep Carreras Leukaemia Research Institute (IJC)
Co-authored papers 1
Giorgio Colombo
Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico
Co-authored papers 1
Santo Fortunato
Center for Complex Networks and Systems Research, Indiana University
Co-authored papers 1
Release 1.2