Author details

Full Name

Robert A Edwards

Affiliation

ORCID

Career Start Year

1996

Papers

151

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37293229	The human gut virome: composition, colonization, interactions, and impacts on human health.		2023
35965269	Coral and Seawater Metagenomes Reveal Key Microbial Functions to Coral Health and Ecosystem Functioning Shaped at Reef Scale.	Microbial Ecology	2023
37738590	Phables: from fragmented assemblies to high-quality bacteriophage genomes.		2023
37550406	Emergent community architecture despite distinct diversity in the global whale shark (Rhincodon typus) epidermal microbiome.		2023
37154562	Host Association and Spatial Proximity Shape but Do Not Constrain Population Structure in the Mutualistic Symbiont Xenorhabdus bovienii.	mBio	2023
37205434	Prophage rates in the human microbiome vary by body site and host health.		2023
37131798	The Promise and Pitfalls of Prophages.		2023
37066369	Phables: from fragmented assemblies to high-quality bacteriophage genomes.		2023
35140890	Predicting the capsid architecture of phages from metagenomic data.	Computational and Structural Biotechnology Journal	2022
36014086	How Metagenomics Has Transformed Our Understanding of Bacteriophages in Microbiome Research.	Microorganisms	2022
35630428	The StkSR Two-Component System Influences Colistin Resistance in .	Microorganisms	2022
36520686	Ten simple rules and a template for creating workflows-as-applications.	PLoS Comput Biol	2022
34781105	Perspective on taxonomic classification of uncultivated viruses.	Curr Opin Virol	2021
34286299	RaFAH: Host prediction for viruses of Bacteria and Archaea based on protein content.	Patterns	2021
33531404	A Novel Group of Promiscuous Podophages Infecting Diverse Gammaproteobacteria from River Communities Exhibits Dynamic Intergenus Host Adaptation.	mSystems	2021
33734357	MultiPhATE2: code for functional annotation and comparison of phage genomes.	G3: Genes, Genomes, Genetics	2021
34206564	No Evidence Known Viruses Play a Role in the Pathogenesis of Onchocerciasis-Associated Epilepsy. An Explorative Metagenomic Case-Control Study.	Pathogens	2021
33429904	Utilizing Amino Acid Composition and Entropy of Potential Open Reading Frames to Identify Protein-Coding Genes.	Microorganisms	2021
32723799	A Distinct Contractile Injection System Gene Cluster Found in a Majority of Healthy Adult Human Microbiomes.	mSystems	2020
32024463	Genomic and ecological attributes of marine bacteriophages encoding bacterial virulence genes.	BMC Genomics	2020
32316423	Towards Predicting Gut Microbial Metabolism: Integration of Flux Balance Analysis and Untargeted Metabolomics.	Metabolites	2020
32127450	Modeling of the Coral Microbiome: the Influence of Temperature and Microbial Network.	mBio	2020
32162068	Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee.	Archives of Virology	2020
32273998	Decoding diversity in a coral reef fish species complex with restricted range using metagenomic sequencing of gut contents.	Ecology and Evolution	2020
32534596	The skin microbiome of elasmobranchs follows phylosymbiosis, but in teleost fishes, the microbiomes converge.	Microbiome	2020
33137102	PhANNs, a fast and accurate tool and web server to classify phage structural proteins.	PLoS Computational Biology	2020
31329826	PHANOTATE: a novel approach to gene identification in phage genomes.		2019
30979882	Diel population and functional synchrony of microbial communities on coral reefs.	Nature Communications	2019
30872700	'Genome skimming' with the MinION hand-held sequencer identifies CITES-listed shark species in India's exports market.	Scientific Reports	2019
31086982	multiPhATE: bioinformatics pipeline for functional annotation of phage isolates.		2019
31417506	Acidobacteria Subgroups and Their Metabolic Potential for Carbon Degradation in Sugarcane Soil Amended With Vinasse and Nitrogen Fertilizers.	Frontiers in Microbiology	2019
31012060	Cyanobacterial biodiversity of semiarid public drinking water supply reservoirs assessed via next-generation DNA sequencing technology.	Journal of Microbiology	2019
30899107	Prodigious Prevotella phages.	Nature Microbiology	2019
29686949	Growth Score: a single metric to define growth in 96-well phenotype assays.	PeerJ	2018
29356990	Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee.	Arch Virol	2018
29134599	Phage Genome Annotation Using the RAST Pipeline.	Methods in Molecular Biology	2018
29133882	Discovery of an expansive bacteriophage family that includes the most abundant viruses from the human gut.	Nature Microbiology	2018
29642630	Aging and Intermittent Fasting Impact on Transcriptional Regulation and Physiological Responses of Adult Drosophila Neuronal and Muscle Tissues.	International Journal of Molecular Sciences	2018
28040838	Taxonomy of prokaryotic viruses: 2016 update from the ICTV bacterial and archaeal viruses subcommittee.	Arch Virol	2017
28677677	Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans.	Nature Communications	2017
28588555	Bacterial Community Associated with the Reef Coral Momentum Boundary Layer over a Diel Cycle.	Frontiers in Microbiology	2017
28452987	Variability and host density independence in inductions-based estimates of environmental lysogeny.	Nat Microbiol	2017
28451970	An Agile Functional Analysis of Metagenomic Data Using SUPER-FOCUS.	Methods in Molecular Biology	2017
28369246	PARTIE: a partition engine to separate metagenomic and amplicon projects in the Sequence Read Archive.		2017
28967888	Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.	Nat Methods	2017
28786410	Corrigendum: Allelic variation contributes to bacterial host specificity.	Nat Commun	2017
29183281	Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes.	BMC Genomics	2017
29204318	Kullback Leibler divergence in complete bacterial and phage genomes.	PeerJ	2017
28200078	PMAnalyzer: a new web interface for bacterial growth curve analysis.		2017
27581878	Using viromes to predict novel immune proteins in non-model organisms.		2016