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Author Details

Sijia Liu
Mayo Clinic, University at Buffalo - North Campus
0000-0001-9763-1164
2016
53
15
PMIDPaper TitleJournal TitlePublished Year
37128369Towards User-centered Corpus Development: Lessons Learnt from Designing and Developing MedTator.AMIA Annu Symp Proc2023
37486222Dual-Signal Cascaded Nucleic Acid Amplification Circuit-Loaded Metal-Organic Frameworks for Accurate and Robust Imaging of Intracellular MicroRNA.Langmuir2023
37479735The IMPACT framework and implementation for accessible in silico clinical phenotyping in the digital era.NPJ Digit Med2023
36988136An Intelligent Laser-Free Photodynamic Therapy Based on Endogenous miRNA-Amplified CRET Nanoplatform.Chemistry2023
37368483Acquisition of a Lexicon for Family History Information: Bidirectional Encoder Representations From Transformers-Assisted Sublanguage Analysis.JMIR Med Inform2023
37000801Assessing document section heterogeneity across multiple electronic health record systems for computational phenotyping: A case study of heart-failure phenotyping algorithm.PLoS One2023
37195805Chemiluminescence resonance energy transfer-based multistage nucleic acid amplification circuits for MiRNA detection with low background.Analyst2023
35077901Developing an ETL tool for converting the PCORnet CDM into the OMOP CDM to facilitate the COVID-19 data integration.J Biomed Inform2022
35854735Assessment of Data Quality Variability across Two EHR Systems through a Case Study of Post-Surgical Complications.AMIA Jt Summits Transl Sci Proc2022
35917480Assessment of Electronic Health Record for Cancer Research and Patient Care Through a Scoping Review of Cancer Natural Language Processing.JCO Clin Cancer Inform2022
35189467Acid-improved DNAzyme-based chemiluminescence miRNA assay coupled with enzyme-free concatenated DNA circuit.Biosens Bioelectron2022
34983060MedTator: a serverless annotation tool for corpus development.Bioinformatics2022
35171108Patient Portal Messaging for Asynchronous Virtual Care During the COVID-19 Pandemic: Retrospective Analysis.JMIR Hum Factors2022
35261092Midwest rural-urban disparities in use of patient online services for COVID-19.J Rural Health2022
33321199An aberration detection-based approach for sentinel syndromic surveillance of COVID-19 and other novel influenza-like illnesses.J Biomed Inform2021
33502329Family History Extraction From Synthetic Clinical Narratives Using Natural Language Processing: Overview and Evaluation of a Challenge Data Set and Solutions for the 2019 National NLP Clinical Challenges (n2c2)/Open Health Natural Language Processing (OHNLP) Competition.JMIR Med Inform2021
34457178CQL4NLP: Development and Integration of FHIR NLP Extensions in Clinical Quality Language for EHR-driven Phenotyping.AMIA Jt Summits Transl Sci Proc2021
34423261A fast, resource efficient, and reliable rule-based system for COVID-19 symptom identification.JAMIA Open2021
34033803Batch enrollment for an artificial intelligence-guided intervention to lower neurologic events in patients with undiagnosed atrial fibrillation: rationale and design of a digital clinical trial.Am Heart J2021
34032581Leveraging Genetic Reports and Electronic Health Records for the Prediction of Primary Cancers: Algorithm Development and Validation Study.JMIR Med Inform2021
33160272Modeling cancer clinical trials using HL7 FHIR to support downstream applications: A case study with colorectal cancer data.Int J Med Inform2021
33325582Conversion of left atrial volume to diameter for automated estimation of sudden cardiac death risk in hypertrophic cardiomyopathy.Echocardiography2021
33021486Implementation of a Cohort Retrieval System for Clinical Data Repositories Using the Observational Medical Outcomes Partnership Common Data Model: Proof-of-Concept System Validation.JMIR Med Inform2020
33215074Evaluation of patient-level retrieval from electronic health record data for a cohort discovery task.JAMIA Open2020
32768446Clinical concept extraction: A methodology review.J Biomed Inform2020
32626903Time event ontology (TEO): to support semantic representation and reasoning of complex temporal relations of clinical events.J Am Med Inform Assoc2020
32933697Facile synthesis of carboxymethyl cellulose sulfur quantum dots for live cell imaging and sensitive detection of Cr(VI) and ascorbic acid.Carbohydr Polym2020
30616584A clinical text classification paradigm using weak supervision and deep representation.BMC Med Inform Decis Mak2019
35415427Salience of Medical Concepts of Inside Clinical Texts and Outside Medical Records for Referred Cardiovascular Patients.J Healthc Inform Res2019
31872069Desiderata for delivering NLP to accelerate healthcare AI advancement and a Mayo Clinic NLP-as-a-service implementation.NPJ Digit Med2019
31709390Test collections for electronic health record-based clinical information retrieval.JAMIA Open2019
31882003Selected articles from the BioCreative/OHNLP challenge 2018.BMC Med Inform Decis Mak2019
31255713HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology.J Biomed Inform2019
31304389Deep learning and alternative learning strategies for retrospective real-world clinical data.NPJ Digit Med2019
31160009Automated extraction of sudden cardiac death risk factors in hypertrophic cardiomyopathy patients by natural language processing.Int J Med Inform2019
30764825Rare disease knowledge enrichment through a data-driven approach.BMC Med Inform Decis Mak2019
29162496Clinical information extraction applications: A literature review.J Biomed Inform2018
30217670A comparison of word embeddings for the biomedical natural language processing.J Biomed Inform2018
30131701Detecting Pharmacovigilance Signals Combining Electronic Medical Records With Spontaneous Reports: A Case Study of Conventional Disease-Modifying Antirheumatic Drugs for Rheumatoid Arthritis.Front Pharmacol2018
29888045Integrating Structured and Unstructured EHR Data Using an FHIR-based Type System: A Case Study with Medication Data.AMIA Jt Summits Transl Sci Proc2018
29883623Modeling asynchronous event sequences with RNNs.J Biomed Inform2018
29854225Leveraging Collaborative Filtering to Accelerate Rare Disease Diagnosis.AMIA Annu Symp Proc2018
30295724Extracting chemical-protein relations using attention-based neural networks.Database (Oxford)2018
30305261Utilization of Electronic Medical Records and Biomedical Literature to Support the Diagnosis of Rare Diseases Using Data Fusion and Collaborative Filtering Approaches.JMIR Med Inform2018
29373609Systematic identification of latent disease-gene associations from PubMed articles.PLoS One2018
28815115Discovering adverse drug events combining spontaneous reports with electronic medical records: a case study of conventional DMARDs and biologics for rheumatoid arthritis.AMIA Jt Summits Transl Sci Proc2017
28269875A Topic-modeling Based Framework for Drug-drug Interaction Classification from Biomedical Text.AMIA Annu Symp Proc2017
29038097Recommending Education Materials for Diabetic Questions Using Information Retrieval Approaches.J Med Internet Res2017
29295172Aligned-Layer Text Search in Clinical Notes.Stud Health Technol Inform2017
28815152Populating Physician Biographical Pages Based on EMR Data.AMIA Jt Summits Transl Sci Proc2017
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Collaborators

Hongfang Liu
Mayo Clinic
Co-authored papers 35
Liwei Wang
University of Texas Health Science Center at Houston, Mayo Clinic
Co-authored papers 23
Yanshan Wang
Mayo Clinic
Co-authored papers 23
Andrew Wen
Mayo Clinic
Co-authored papers 22
Feichen Shen
Shanghai Polytechnic University
Co-authored papers 18
Sungrim Moon
Mayo Clinic
Co-authored papers 11
Majid Rastegar-Mojarad
Mayo Clinic
Co-authored papers 11
Sunyang Fu
Mayo Clinic
Co-authored papers 11
Sunghwan Sohn
Mayo Clinic
Co-authored papers 9
Guoqian Jiang
Mayo Clinic Rochester Minnesota USA.
Co-authored papers 5
Yue Yu
Health Sciences Mayo Clinic
Co-authored papers 5
Nansu Zong
Mayo Clinic
Co-authored papers 5
Vipin Chaudhary
University at Buffalo
Co-authored papers 4
Fuan Wang
Zhongnan Hospital of Wuhan University
Co-authored papers 4
Huimin Wang
College of Veterinary Medicine, Shanxi Agricultural University
Co-authored papers 4
William Hersh
Oregon Health & Science University
Co-authored papers 4
Steven Bedrick
Colorado College, Oregon Health & Science University, Oregon Health and Science University
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Jiabing Ran
College of Biological & Pharmaceutical Sciences, China Three Gorges University
Co-authored papers 4
Changying Yang
College of Biological & Pharmaceutical Sciences, China Three Gorges University
Co-authored papers 4
Peter A Noseworthy
Mayo Clinic
Co-authored papers 3
Cui Tao
The University of Texas Health Science Center at Houston
Co-authored papers 3
Dingcheng Li
University of Minnesota
Co-authored papers 3
Naveed Afzal
Dorset County Hospital Foundation Trust
Co-authored papers 3
Paul Kingsbury
Keck School of Medicine, University of Southern California
Co-authored papers 3
Yiqing Zhao
Northwestern University
Co-authored papers 3
Rajeev Chaudhry
Mayo Clinic
Co-authored papers 2
Adelaide M Arruda-Olson
Mayo Clinic
Co-authored papers 2
Jeffrey B Geske
Mayo Clinic
Co-authored papers 2
Curtis B Storlie
Mayo Clinic
Co-authored papers 2
Yuqun Zeng
Zhejiang Provincial People's Hospital (People's Hospital of Hangzhou Medical College)
Co-authored papers 2
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