Author details

Full Name

Manuel Rueda

Affiliation

The Barcelona Institute of Science and Technology

ORCID

Career Start Year

2001

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
34791407	The European Genome-phenome Archive in 2021.	Nucleic Acids Res	2022
35438138	A quality control portal for sequencing data deposited at the European genome-phenome archive.	Brief Bioinform	2022
35980167	Beacon v2 Reference Implementation: a toolkit to enable federated sharing of genomic and phenotypic data.	Bioinformatics	2022
35297548	Beacon v2 and Beacon networks: A "lingua franca" for federated data discovery in biomedical genomics, and beyond.	Hum Mutat	2022
35072136	GA4GH: International policies and standards for data sharing across genomic research and healthcare.	Cell Genom	2021
31847883	Re-analysis of whole-exome sequencing data uncovers novel diagnostic variants and improves molecular diagnostic yields for sudden death and idiopathic diseases.	Genome Med	2019
29393933	Corrigendum: Molecular Autopsy for Sudden Death in the Young: Is Data Aggregation the Key?	Front Cardiovasc Med	2018
28055203	From Homology Models to a Set of Predictive Binding Pockets-a 5-HT<sub>1A</sub> Receptor Case Study.	J Chem Inf Model	2017
28383544	Mutation of WIF1: a potential novel cause of a Nail-Patella-like disorder.	Genet Med	2017
29181379	Molecular Autopsy for Sudden Death in the Young: Is Data Aggregation the Key?	Front Cardiovasc Med	2017
28821228	SG-ADVISER mtDNA: a web server for mitochondrial DNA annotation with data from 200 samples of a healthy aging cohort.	BMC Bioinformatics	2017
26875695	Conformational plasticity of RepB, the replication initiator protein of promiscuous streptococcal plasmid pMV158.	Sci Rep	2016
27727376	Molecular Autopsy for Sudden Unexpected Death.	JAMA	2016
27294484	Conformational Heterogeneity of Unbound Proteins Enhances Recognition in Protein-Protein Encounters.	J Chem Theory Comput	2016
27114037	Whole-Genome Sequencing of a Healthy Aging Cohort.	Cell	2016
24348236	Exploring early stages of the chemical unfolding of proteins at the proteome scale.	PLoS Comput Biol	2013
24330655	BioSuper: a web tool for the superimposition of biomolecules and assemblies with rotational symmetry.	BMC Struct Biol	2013
22323222	Ligand-guided receptor optimization.	Methods Mol Biol	2012
22947092	ALiBERO: evolving a team of complementary pocket conformations rather than a single leader.	J Chem Inf Model	2012
21645858	A systematic study of the energetics involved in structural changes upon association and connectivity in protein interaction networks.	Structure	2011
21827947	Status of GPCR modeling and docking as reflected by community-wide GPCR Dock 2010 assessment.	Structure	2011
21625529	Systematic exploitation of multiple receptor conformations for virtual ligand screening.	PLoS One	2011
20000587	Recipes for the selection of experimental protein conformations for virtual screening.	J Chem Inf Model	2010
26616090	Approaching Elastic Network Models to Molecular Dynamics Flexibility.	J Chem Theory Comput	2010
21070939	MoDEL (Molecular Dynamics Extended Library): a database of atomistic molecular dynamics trajectories.	Structure	2010
20871105	SimiCon: a web tool for protein-ligand model comparison through calculation of equivalent atomic contacts.	Bioinformatics	2010
20063437	GPCR 3D homology models for ligand screening: lessons learned from blind predictions of adenosine A2a receptor complex.	Proteins	2010
19220918	Comparison of molecular dynamics and superfamily spaces of protein domain deformation.	BMC Struct Biol	2009
19434904	Consistent improvement of cross-docking results using binding site ensembles generated with elastic network normal modes.	J Chem Inf Model	2009
19429600	FlexServ: an integrated tool for the analysis of protein flexibility.	Bioinformatics	2009
18487297	Exploring the suitability of coarse-grained techniques for the representation of protein dynamics.	Biophys J	2008
17215349	A consensus view of protein dynamics.	Proc Natl Acad Sci U S A	2007
17502102	Thorough validation of protein normal mode analysis: a comparative study with essential dynamics.	Structure	2007
16363879	Data mining of molecular dynamics trajectories of nucleic acids.	J Biomol Struct Dyn	2006
26626512	Essential Dynamics:â¿¿ A Tool for Efficient Trajectory Compression and Management.	J Chem Theory Comput	2006
16536534	G-quadruplexes can maintain their structure in the gas phase.	J Am Chem Soc	2006
16292787	Destabilization of quadruplex DNA by 8-aminoguanine.	Chembiochem	2006
16104746	Nature of minor-groove binders-DNA complexes in the gas phase.	J Am Chem Soc	2005
26641895	Exploring the Essential Dynamics of B-DNA.	J Chem Theory Comput	2005
15298889	Exploring the counterion atmosphere around DNA: what can be learned from molecular dynamics simulations?	Biophys J	2004
12823023	The structure and dynamics of DNA in the gas phase.	J Am Chem Soc	2003
11891628	A theoretical investigation on the effect of remote amino groups in hydrogen bonding of nucleic acids.	Biopolymers	2001

1 - 42 of 42

Ignacia Echeverria

University of California san francisco

Career Start Year 2010

Number of shared co-authors 0

Michael T Zimmermann

Medical College of Wisconsin

Career Start Year 2009

Number of shared co-authors 2

Ezgi Karaca

Dokuz Eylul University

Career Start Year 2008

Number of shared co-authors 2

Sergei Grudinin

University Grenoble Alpes, CNRS

Career Start Year 2005

Number of shared co-authors 2

Henry van den Bedem

University of California San Francisco

Career Start Year 2002

Number of shared co-authors 2

Ivaylo Ivanov

Georgia State University, GA 30302 USA Center for Diagnostics and Therapeutics

Career Start Year 2002

Number of shared co-authors 0

Rommie E Amaro

University of California

Career Start Year 2001

Number of shared co-authors 0

Matteo Dal Peraro

Institute of Bioengineering

Career Start Year 2001

Number of shared co-authors 2

Romina Oliva

University of Naples "Parthenope"

Career Start Year 2000

Number of shared co-authors 3

Peter W Rose

University of California

Career Start Year 1999

Number of shared co-authors 4

Jo??o P G L M Rodrigues

Stanford University

Career Start Year 1999

Number of shared co-authors 2

Nikolay V Dokholyan

Pennsylvania State University College of Medicine

Career Start Year 1998

Number of shared co-authors 1

Michael Feig

Michigan State University

Career Start Year 1998

Number of shared co-authors 0

Marc A Marti-Renom

Universitat Pompeu Fabra (UPF)

Career Start Year 1998

Number of shared co-authors 9

Marc F Lensink

University Lille, CNRS

Career Start Year 1996

Number of shared co-authors 2

Ivet Bahar

Laufer Center for Physical and Quantitative Biology, Stony Brook University

Career Start Year 1994

Number of shared co-authors 1

Giorgio Colombo

Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico

Career Start Year 1993

Number of shared co-authors 0

Alexandre M J J Bonvin

Bijvoet Center for Biomolecular Research, Utrecht University

Career Start Year 1991

Number of shared co-authors 6

Carlos J Camacho

University of Pittsburgh

Career Start Year 1990

Number of shared co-authors 2

Ram Samudrala

Jacobs School of Medicine and Biomedical Sciences, University at Buffalo

Career Start Year 1990

Number of shared co-authors 0

Paul A Bates

The Francis Crick Institute

Career Start Year 1989

Number of shared co-authors 2

Rebecca C Wade

Center for Molecular Biology (ZMBH), Heidelberg University

Career Start Year 1989

Number of shared co-authors 2

Ariel Fern??ndez

University of Florida

Career Start Year 1984

Number of shared co-authors 0

Haruki Nakamura

Institute for Protein Research, Osaka University

Career Start Year 1980

Number of shared co-authors 4

Ruth Nussinov

Sackler School of Medicine, Tel Aviv University

Career Start Year 1980

Number of shared co-authors 2

David A Case

Rutgers University

Career Start Year 1977

Number of shared co-authors 0

Shoshana J Wodak

VIB-VUB Center for Structural Biology

Career Start Year 1975

Number of shared co-authors 5

Charles L Brooks

University of Michigan ann arbor

Career Start Year 1974

Number of shared co-authors 2

Michael Levitt

Stanford University

Career Start Year 1969

Number of shared co-authors 1

Jens Meiler

Vanderbilt University

Career Start Year 1954

Number of shared co-authors 4

row(s) 1 - 30 of 30

Ruben Abagyan

Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California

Co-authored papers 11

Ali Torkamani

Scripps Science Institute

Co-authored papers 7

Sarah E Topol

The Scripps Research Translational Institute, The Scripps Research Institute

Co-authored papers 5

Jordi Rambla

Universitat Pompeu Fabra

Co-authored papers 5

Eric J Topol

Universidade Federal de Sao Paulo

Co-authored papers 5

Arcadi Navarro

Barcelonabeta Brain Research Center (BBRC), Pasqual Maragall Foundation

Co-authored papers 4

Lauren A Fromont

The Barcelona Institute of Science and Technology

Co-authored papers 4

Tierney Phillips

Bluestar Genomics Inc.

Co-authored papers 3

Aina Jene

The Barcelona Institute of Science and Technology

Co-authored papers 3

Emily G Spencer

Scripps Research Translational Institute

Co-authored papers 3

Giselle Kerry

European Bioinformatics Institute

Co-authored papers 2

Juha T??rnroos

ELIXIR Finland CSC - IT Center for Science Ltd

Co-authored papers 2

Michael Baudis

University of Zurich

Co-authored papers 2

Paul Flicek

European Bioinformatics Institute

Co-authored papers 2

Juan Fern??ndez-Recio

Instituto de Ciencias de la Vid y del Vino (ICVV-CSIC)

Co-authored papers 2

Roderic Guig??

Barcelona Institute of Science and Technology

Co-authored papers 2

Tim Beck

University of Leicester

Co-authored papers 2

Helen Parkinson

European Bioinformatics Institute

Co-authored papers 2

Anthony J Brookes

University of Leicester

Co-authored papers 2

Mallory A Freeberg

EMBL's European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 2

John D Spalding

European Bioinformatics Institute

Co-authored papers 2

Gary Saunders

European Bioinformatics Institute (EMBL-EBI)

Co-authored papers 2

Ada Hamosh

Johns Hopkins University School of Medicine

Co-authored papers 1

Melissa A Haendel

American Medical Informatics Association, Oregon Health and Science University, Oregon State University, University of Colorado Anschutz Medical Campus, University of North Carolina at Chapel Hill, University of Wisconsin-Madison

Co-authored papers 1

Reece K Hart

Broad Institute of MIT and Harvard

Co-authored papers 1

Tristan Nelson

Genomic Medicine Institute

Co-authored papers 1

Debyani Chakravarty

Memorial Sloan Kettering Cancer Center

Co-authored papers 1

David Bernick

Broad Institute of MIT and Harvard