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Author Details

Patrik D'haeseleer
Lawrence Livermore National Laboratory
1999
48
28
PMIDPaper TitleJournal TitlePublished Year
36992088The Polymorphic Membrane Protein G Has a Neutral Effect and the Plasmid Glycoprotein 3 an Antagonistic Effect on the Ability of the Major Outer Membrane Protein to Elicit Protective Immune Responses against a <i>Chlamydia muridarum</i> Respiratory Challenge.Vaccines (Basel)2023
35977399Bacterial exometabolites influence Chlamydomonas cell cycle and double algal productivity.FEMS Microbiol Ecol2022
32986834The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.Nucleic Acids Res2021
34659206Shotgun Immunoproteomic Approach for the Discovery of Linear B-Cell Epitopes in Biothreat Agents <i>Francisella tularensis</i> and <i>Burkholderia pseudomallei</i>.Front Immunol2021
33179751The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.Nucleic Acids Res2021
30406044Proteomic Profiling of <i>Burkholderia thailandensis</i> During Host Infection Using Bio-Orthogonal Noncanonical Amino Acid Tagging (BONCAT).Front Cell Infect Microbiol2018
30567498Combining multiple functional annotation tools increases coverage of metabolic annotation.BMC Genomics2018
29167704Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate.Stand Genomic Sci2017
27365360Genome Sequence of the Historical Clinical Isolate Burkholderia pseudomallei PHLS 6.Genome Announc2016
24236615Discovery of two novel β-glucosidases from an Amazon soil metagenomic library.FEMS Microbiol Lett2014
25648696Metatranscriptomic analysis of lignocellulolytic microbial communities involved in high-solids decomposition of rice straw.Biotechnol Biofuels2014
24984213Phylogenomically guided identification of industrially relevant GH1 β-glucosidases through DNA synthesis and nanostructure-initiator mass spectrometry.ACS Chem Biol2014
24479406Discovery and characterization of ionic liquid-tolerant thermophilic cellulases from a switchgrass-adapted microbial community.Biotechnol Biofuels2014
23580647From soil to structure, a novel dimeric β-glucosidase belonging to glycoside hydrolase family 3 isolated from compost using metagenomic analysis.J Biol Chem2013
24205054Discovery of microorganisms and enzymes involved in high-solids decomposition of rice straw using metagenomic analyses.PLoS One2013
23894306Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass.PLoS One2013
24019987Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron.Stand Genomic Sci2013
23704901Rapid countermeasure discovery against Francisella tularensis based on a metabolic network reconstruction.PLoS One2013
21814288Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume.ISME J2012
22759983Glycoside hydrolases from a targeted compost metagenome, activity-screening and functional characterization.BMC Biotechnol2012
22586090Global transcriptome response to ionic liquid by a tropical rain forest soil bacterium, Enterobacter lignolyticus.Proc Natl Acad Sci U S A2012
22649505A thermophilic ionic liquid-tolerant cellulase cocktail for the production of cellulosic biofuels.PLoS One2012
22217654Application of phenotypic microarrays to environmental microbiology.Curr Opin Biotechnol2012
21475584Complete genome sequence of "Thioalkalivibrio sulfidophilus" HL-EbGr7.Stand Genomic Sci2011
22675584Complete genome sequence of Thioalkalivibrio sp. K90mix.Stand Genomic Sci2011
22180812Complete genome sequence of "Enterobacter lignolyticus" SCF1.Stand Genomic Sci2011
21685158Identification of biofilm matrix-associated proteins from an acid mine drainage microbial community.Appl Environ Microbiol2011
20098679Targeted discovery of glycoside hydrolases from a switchgrass-adapted compost community.PLoS One2010
20736401Deep-sea oil plume enriches indigenous oil-degrading bacteria.Science2010
20033048A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.Nature2009
21304663Complete genome sequence of Slackia heliotrinireducens type strain (RHS 1).Stand Genomic Sci2009
21304651Complete genome sequence of Halogeometricum borinquense type strain (PR3).Stand Genomic Sci2009
21304650Complete genome sequence of Saccharomonospora viridis type strain (P101).Stand Genomic Sci2009
21304646Complete genome sequence of Sanguibacter keddieii type strain (ST-74).Stand Genomic Sci2009
21304644Complete genome sequence of Cryptobacterium curtum type strain (12-3).Stand Genomic Sci2009
21304632Complete genome sequence of Kytococcus sedentarius type strain (541).Stand Genomic Sci2009
21304631Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10).Stand Genomic Sci2009
18467347Microbial genotype-phenotype mapping by class association rule mining.Bioinformatics2008
16601727What are DNA sequence motifs?Nat Biotechnol2006
16738557Deciphering principles of transcription regulation in eukaryotic genomes.Mol Syst Biol2006
16900144How does DNA sequence motif discovery work?Nat Biotechnol2006
16082361Closing the circle of osmoregulation.Nat Biotechnol2005
16333293How does gene expression clustering work?Nat Biotechnol2005
16448015Estimating and improving protein interaction error rates.Proc IEEE Comput Syst Bioinform Conf2004
14583118From annotated genomes to metabolic flux models and kinetic parameter fitting.OMICS2003
12413400Automated modelling of signal transduction networks.BMC Bioinformatics2002
11099257Genetic network inference: from co-expression clustering to reverse engineering.Bioinformatics2000
10380184Linear modeling of mRNA expression levels during CNS development and injury.Pac Symp Biocomput1999
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Collaborators

Blake A Simmons
Joint BioEnergy Institute, USA Lawrence Berkeley National Laboratory
Co-authored papers 13
Konstantinos Mavromatis
Celgene Corporation
Co-authored papers 12
Nikos C Kyrpides
Co-authored papers 11
Amrita Pati
Department of Energy (DOE) Joint Genome Institute
Co-authored papers 11
Alla Lapidus
Center for Algorithmic Biotechnology, Saint Petersburg State University
Co-authored papers 10
Patrick S G Chain
Los Alamos National Laboratory
Co-authored papers 10
Jonathan A Eisen
McLean Hospital
Co-authored papers 8
Hans-Peter Klenk
Co-authored papers 8
Terry C Hazen
University of Tennessee
Co-authored papers 8
Markus Göker
Co-authored papers 7
Cliff Han
Los Alamos National Laboratory
Co-authored papers 6
Steven W Singer
Co-authored papers 6
Thomas Brettin
University of Chicago
Co-authored papers 5
Jane I Khudyakov
University of the Pacific
Co-authored papers 5
Kristen M DeAngelis
University of Massachusetts
Co-authored papers 4
Adam P Arkin
Lawrence Berkeley National Laboratory
Co-authored papers 4
Sharon Borglin
Lawrence Berkeley National Laboratory
Co-authored papers 3
Dylan Chivian
Lawrence Berkeley National Laboratory
Co-authored papers 3
Paul D Adams
Lawrence Berkeley National Laboratory
Co-authored papers 3
Tanja Woyke
Co-authored papers 3
George M Church
Harvard Medical School
Co-authored papers 3
Ye Deng
Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences
Co-authored papers 2
Janaka N Edirisinghe
Computation Institute, University of Chicago
Co-authored papers 2
Gregory D Friedland
Joint BioEnergy Institute
Co-authored papers 2
Matthew DeJongh
Hope College
Co-authored papers 2
Elisha M Wood-Charlson
Lawrence Berkeley National Laboratory
Co-authored papers 2
Karen W Davenport
Los Alamos National Laboratory
Co-authored papers 2
Dominique C Joyner
University of Tennessee
Co-authored papers 2
Trent R Northen
Co-authored papers 2
Sean R McCorkle
Brookhaven National Laboratory
Co-authored papers 2
Release 1.2