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Author Details

James H Leebens-Mack
1996
154
57
PMIDPaper TitleJournal TitlePublished Year
36721257Interchromosomal linkage disequilibrium and linked fitness cost loci associated with selection for herbicide resistance.2023
37758220150 Years of Coevolution Research: Evolution and Ecology of Yucca Moths (Prodoxidae) and Their Hosts.2023
37711293Rampant chloroplast capture in Sarracenia revealed by plastome phylogeny.2023
36582124Phylotranscriptomic Analyses of Mycoheterotrophic Monocots Show a Continuum of Convergent Evolutionary Changes in Expressed Nuclear Genes From Three Independent Nonphotosynthetic Lineages.Genome Biol Evol2023
36952412Elucidation of the pathway for biosynthesis of saponin adjuvants from the soapbark tree.2023
36701471Complex scaffold remodeling in plant triterpene biosynthesis.2023
37191440The Agavoideae: an emergent model clade for CAM evolutionary biology.2023
37055453From comparative gene content and gene order to ancestral contigs, chromosomes and karyotypes.2023
35042800The Earth BioGenome Project 2020: Starting the clock.Proc Natl Acad Sci U S A2022
35764640The genomic basis of the plant island syndrome in Darwin's giant daisies.Nature Communications2022
35720975Representing sex chromosomes in genome assemblies.Cell Genomics2022
36050461Dynamic genome evolution in a model fern.Nat Plants2022
35596719Differential timing of gene expression and recruitment in independent origins of CAM in the Agavoideae (Asparagaceae).New Phytologist2022
36483967Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes.Front Plant Sci2022
36798801PlantTribes2: Tools for comparative gene family analysis in plant genomics.2022
34342006A derived ZW chromosome system in Amborella trichopoda, representing the sister lineage to all other extant flowering plants.New Phytologist2022
35042803Green plant genomes: What we know in an era of rapidly expanding opportunities.Proc Natl Acad Sci U S A2022
34806950The monoploid chromosome complement of reconstructed ancestral genomes in a phylogeny.Journal of Bioinformatics and Computational Biology2021
32166326Leaf anatomy is not correlated to CAM function in a C3+CAM hybrid species, Yucca gloriosa.Annals of Botany2021
33576423Focus on the biology of plant genomes.Plant Cell2021
33519836Hybridization History and Repetitive Element Content in the Genome of a Homoploid Hybrid, <i>Yucca gloriosa</i> (Asparagaceae).Front Plant Sci2021
34263456Comprehending Cornales: phylogenetic reconstruction of the order using the Angiosperms353 probe set.American Journal of Botany2021
34040628Editorial: Recent Advances and Future Perspectives for Agavoideae Research: and Related Taxa.Frontiers in Plant Science2021
34336404Target sequence capture in orchids: Developing a kit to sequence hundreds of single-copy loci.Applications in Plant Sciences2021
33280113Evolution of rapid blue-light response linked to explosive diversification of ferns in angiosperm forests.New Phytologist2021
34783601Ancestral Flowering Plant Chromosomes and Gene Orders Based on Generalized Adjacencies and Chromosomal Gene Co-Occurrences.Journal of Computational Biology2021
34475528Insights into angiosperm evolution, floral development and chemical biosynthesis from the Aristolochia fimbriata genome.2021
32220850Sex Determination by Two Y-Linked Genes in Garden Asparagus.Plant Cell2020
31851546Sequencing and Analyzing the Transcriptomes of a Thousand Species Across the Tree of Life for Green Plants.Annual Review of Plant Biology2020
31155775Distributed phenomics with the unPAK project reveals the effects of mutations.Plant Journal2019
31644802Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP).Gigascience2019
30535394A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering.Systematic Biology2019
30626928Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution.2019
30870557Shared expression of crassulacean acid metabolism (CAM) genes pre-dates the origin of CAM in the genus Yucca.Journal of Experimental Botany2019
30745906Altered Gene Regulatory Networks Are Associated With the Transition From C to Crassulacean Acid Metabolism in (Oncidiinae: Orchidaceae).Frontiers in Plant Science2018
30389915Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement.Nat Commun2018
30002159Plant 24-nt reproductive phasiRNAs from intramolecular duplex mRNAs in diverse monocots.Genome Research2018
30368769Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi-gene analyses, and a functional model for the origin of monocots.Am J Bot2018
29608785Phylotranscriptomic analysis and genome evolution of the Cypripedioideae (Orchidaceae).American Journal of Botany2018
29746718Shifts in gene expression profiles are associated with weak and strong Crassulacean acid metabolism.American Journal of Botany2018
29069493Horizontal Transfer of Non-LTR Retrotransposons from Arthropods to Flowering Plants.Molecular Biology and Evolution2018
29843615Parallel evolution of storage roots in morning glories (Convolvulaceae).BMC Plant Biology2018
29574686Brassicales phylogeny inferred from 72 plastid genes: A reanalysis of the phylogenetic localization of two paleopolyploid events and origin of novel chemical defenses.American Journal of Botany2018
28258650Concomitant loss of NDH complex-related genes within chloroplast and nuclear genomes in some orchids.Plant Journal2017
28457232The evolution of CHROMOMETHYLASES and gene body DNA methylation in plants.Genome Biol2017
28446636Insights into the Evolution of Hydroxyproline-Rich Glycoproteins from 1000 Plant Transcriptomes.Plant Physiol2017
29093472The asparagus genome sheds light on the origin and evolution of a young Y chromosome.Nat Commun2017
29196618The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism.Nat Commun2017
27974487A Century of Sex Determination in Flowering Plants.Journal of Heredity2017
27591171Evolution of a CAM anatomy predates the origins of Crassulacean acid metabolism in the Agavoideae (Asparagaceae).Molecular Phylogenetics and Evolution2016
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University of British Columbia
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Biodiversity Institute, University of Oxford
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Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University
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Arizona Genomics Institute, University of Arizona
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Oxford e-Research Centre, University of Oxford
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European Molecular Biology Laboratory- European Bioinformatics Institute
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Cambridge Institute for Medical Research, University of Cambridge
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European Bioinformatics Institute (EMBL-EBI)
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US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory
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USC/Children's Hospital Los Angeles Los Angeles California USA.
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Cornell University
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European Bioinformatics Institute
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University of Georgia
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National Institute of Environmental Health Sciences
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National Museum of Natural History, Smithsonian Institution
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EMBL's European Bioinformatics Institute (EMBL-EBI)
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Lawrence Berkeley National Laboratory
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University of Florida
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University of British Columbia
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University of Oxford
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Garvan Institute of Medical Research
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Boyce Thompson Institute (BTI)
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University of Cambridge
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