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Author Details

Patrick Aloy
Institucio Catalana de Recerca i Estudis Avancats (ICREA)
1997
138
48
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36217029A proteome-scale map of the SARS-CoV-2-human contactome.Nat Biotechnol2023
37821946Global analysis of suppressor mutations that rescue human genetic defects.Genome Med2023
37725353BQsupports: systematic assessment of the support and novelty of new biomedical associations.Bioinformatics2023
37337100Democratizing knowledge representation with BioCypher.Nat Biotechnol2023
36894123Characterization of p38α Signaling Networks in Cancer Cells Using Quantitative Proteomics and Phosphoproteomics.Mol Cell Proteomics2023
34626922Connecting chemistry and biology through molecular descriptors.Curr Opin Chem Biol2022
35540106Molecular characterization of chronic liver disease dynamics: From liver fibrosis to acute-on-chronic liver failure.JHEP Rep2022
36085310Integrating and formatting biomedical data as pre-calculated knowledge graph embeddings in the Bioteque.Nat Commun2022
35106508A community challenge for a pancancer drug mechanism of action inference from perturbational profile data.Cell Rep Med2022
34358215Association of Transcriptomic Signatures of Inflammatory Response with Viral Control after Dendritic Cell-Based Therapeutic Vaccination in HIV-1 Infected Individuals.Vaccines (Basel)2021
33677561Analysing the yeast complexome-the Complex Portal rising to the challenge.Nucleic Acids Res2021
34702310Identification and drug-induced reversion of molecular signatures of Alzheimer's disease onset and progression in App<sup>NL-G-F</sup>, App<sup>NL-F</sup>, and 3xTg-AD mouse models.Genome Med2021
34042294Natural variants suppress mutations in hundreds of essential genes.Mol Syst Biol2021
33958448Environmental robustness of the global yeast genetic interaction network.Science2021
34168145Bioactivity descriptors for uncharacterized chemical compounds.Nat Commun2021
32296183A reference map of the human binary protein interactome.Nature2020
31904703A Classifier to Predict Viral Control After Antiretroviral Treatment Interruption in Chronic HIV-1-Infected Patients.J Acquir Immune Defic Syndr2020
32064787Systematic genetics and single-cell imaging reveal widespread morphological pleiotropy and cell-to-cell variability.Mol Syst Biol2020
32939983Systematic analysis of bypass suppression of essential genes.Mol Syst Biol2020
32907621Personalized cancer therapy prioritization based on driver alteration co-occurrence patterns.Genome Med2020
32672454Bioactivity Profile Similarities to Expand the Repertoire of COVID-19 Drugs.J Chem Inf Model2020
32440005Extending the small-molecule similarity principle to all levels of biology with the Chemical Checker.Nat Biotechnol2020
32440008Publisher Correction: Extending the small-molecule similarity principle to all levels of biology with the Chemical Checker.Nat Biotechnol2020
30971948<i>In silico</i> Characterization of Human Prion-Like Proteins: Beyond Neurological Diseases.Front Physiol2019
31803016DYRK1A Overexpression Alters Cognition and Neural-Related Proteomic Pathways in the Hippocampus That Are Rescued by Green Tea Extract and/or Environmental Enrichment.Front Mol Neurosci2019
32128329Virological Outcome Measures During Analytical Treatment Interruptions in Chronic HIV-1-Infected Patients.Open Forum Infect Dis2019
31094488Truncating variant burden in high-functioning autism and pleiotropic effects of LRP1 across psychiatric phenotypesJ Psychiatry Neurosci2019
30914058Encircling the regions of the pharmacogenomic landscape that determine drug response.Genome Med2019
29626539Rationalizing Drug Response in Cancer Cell Lines.J Mol Biol2018
30071882Exploring the OncoGenomic Landscape of cancer.Genome Med2018
30065243Systems analysis of intracellular pH vulnerabilities for cancer therapy.Nat Commun2018
30275468Cell-specific proteome analyses of human bone marrow reveal molecular features of age-dependent functional decline.Nat Commun2018
30274705DynBench3D, a Web-Resource to Dynamically Generate Benchmark Sets of Large Heteromeric Protein Complexes.J Mol Biol2018
29414760Proteome Data Improves Protein Function Prediction in the Interactome of <i>Helicobacter pylori</i>.Mol Cell Proteomics2018
29749927The transcriptomic and epigenetic map of vascular quiescence in the continuous lung endothelium.Elife2018
27879272Quantification of Pathway Cross-talk Reveals Novel Synergistic Drug Combinations for Breast Cancer.Cancer Res2017
28453651A PanorOmic view of personal cancer genomes.Nucleic Acids Res2017
29269382A framework for exhaustively mapping functional missense variants.Mol Syst Biol2017
28662117Detecting similar binding pockets to enable systems polypharmacology.PLoS Comput Biol2017
26995226Risk assessment of Soulatrolide and Mammea (A/BA+A/BB) coumarins from Calophyllum brasiliense by a toxicogenomic and toxicological approach.Food Chem Toxicol2016
27811238Exploring genetic suppression interactions on a global scale.Science2016
27553366Cancer network activity associated with therapeutic response and synergism.Genome Med2016
26807587Novel Neuroprotective Multicomponent Therapy for Amyotrophic Lateral Sclerosis Designed by Networked Systems.PLoS One2016
26688214Residues Coevolution Guides the Systematic Identification of Alternative Functional Conformations in Proteins.Structure2016
26774489Conditional Epistatic Interaction Maps Reveal Global Functional Rewiring of Genome Integrity Pathways in Escherichia coli.Cell Rep2016
27107014An inter-species protein-protein interaction network across vast evolutionary distance.Mol Syst Biol2016
27107012Pooled-matrix protein interaction screens using Barcode Fusion Genetics.Mol Syst Biol2016
26871637Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing.Cell2016
25380960IntSide: a web server for the chemical and biological examination of drug side effects.Bioinformatics2015
26549850Isolation of Human Colon Stem Cells Using Surface Expression of PTK7.Stem Cell Reports2015
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Collaborators

Robert B Russell
Heidelberg University
Co-authored papers 21
Carles Pons
Co-authored papers 13
Francesc X Avil??s
Clinical Institute of Hematology and Oncology, Hospital Clinic Barcelona
Co-authored papers 10
Enrique Querol
Institut de Biotecnologia i Biomedicina, Universitat Autonoma de Barcelona
Co-authored papers 9
Frederick P Roth
University of Toronto
Co-authored papers 9
Arnaud Ceol
European Institute of Oncology IRCCS
Co-authored papers 9
Oriol Guitart-Pla
Institut Pasteur
Co-authored papers 7
Baldo Oliva
Universitat Pompeu Fabra
Co-authored papers 7
Marc Vidal
Blavatnik Institute, Harvard Medical School
Co-authored papers 6
Charles Boone
University of Toronto
Co-authored papers 5
Brenda J Andrews
University of Toronto
Co-authored papers 5
Peer Bork
University of Wurzburg
Co-authored papers 5
Yu Xia
College of Information Engineering, Zhejiang University of Technology
Co-authored papers 4
Kerstin Spirohn
Center for Cancer Systems Biology (CCSB), Dana-Farber Cancer Institute
Co-authored papers 4
Marinella Gebbia
University of Toronto
Co-authored papers 4
Roman Hauser
SSSSGerman Cancer Research Center
Co-authored papers 4
Anne-Claude Gavin
Co-authored papers 4
Stefan Wuchty
University of Miami
Co-authored papers 4
Peter Uetz
Center for the Study of Biological Complexity, Virginia Commonwealth University
Co-authored papers 4
James Vlasblom
University of Regina
Co-authored papers 3
Sadhna Phanse
University of Regina
Co-authored papers 3
Mohan Babu
University of Regina
Co-authored papers 3
Marc A Marti-Renom
Universitat Pompeu Fabra (UPF)
Co-authored papers 3
Michael J E Sternberg
Imperial College London
Co-authored papers 3
Chad L Myers
University of Minnesota - Twin Cities
Co-authored papers 3
Michael Costanzo
Co-authored papers 3
Song Yi
Livestrong Cancer Institutes, Dell Medical School, The University of Texas at Austin
Co-authored papers 3
Nidhi Sahni
The University of Texas MD Anderson Cancer Center
Co-authored papers 3
Zoran Minic
University of Ottawa
Co-authored papers 2
Seesandra V Rajagopala
Vanderbilt University Medical Center
Co-authored papers 2
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