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Author Details

Wyeth W Wasserman
BC Children's Hospital Research Institute, University of British Columbia
1974
218
61
PMIDPaper TitleJournal TitlePublished Year
37962376JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles.Nucleic Acids Res2024
36192604Obtaining genetics insights from deep learning via explainable artificial intelligence.Nat Rev Genet2023
37935654Transcriptional reprogramming by mutated IRF4 in lymphoma.Nat Commun2023
37370113ExplaiNN: interpretable and transparent neural networks for genomics.Genome Biol2023
37166953OnTarget: in silico design of MiniPromoters for targeted delivery of expression.Nucleic Acids Res2023
37260510Refining the genomic determinants underlying escape from X-chromosome inactivation.NAR Genom Bioinform2023
36884218Human germline heterozygous gain-of-function STAT6 variants cause severe allergic disease.J Exp Med2023
36836230Prediction of Blood Risk Score in Diabetes Using Deep Neural Networks.J Clin Med2023
36662884A multimorphic mutation in IRF4 causes human autosomal dominant combined immunodeficiency.Sci Immunol2023
33257509Linkage analysis identifies an isolated strabismus locus at 14q12 overlapping with FOXG1 syndrome region.J Med Genet2022
35789258Human complete NFAT1 deficiency causes a triad of joint contractures, osteochondromas, and B-cell malignancy.Blood2022
35599849Genome-wide sequencing and the clinical diagnosis of genetic disease: The CAUSES study.HGG Adv2022
36061558Using human induced pluripotent stem cell-derived cardiomyocytes to understand the mechanisms driving cardiomyocyte maturation.Front Cardiovasc Med2022
35289834RevUP: an online scoring system for regulatory variants implicated in rare diseases.Bioinformatics2022
34850907JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles.Nucleic Acids Res2022
33419587The genome atlas: navigating a new era of reference genomes.Trends Genet2021
33597016Cross-species examination of X-chromosome inactivation highlights domains of escape from silencing.Epigenetics Chromatin2021
33786587Targeting AXL kinase sensitizes leukemic stem and progenitor cells to venetoclax treatment in acute myeloid leukemia.Blood2021
33531684Human MiniPromoters for ocular-rAAV expression in ON bipolar, cone, corneal, endothelial, Müller glial, and PAX6 cells.Gene Ther2021
33636385Human progranulin-expressing mice as a novel tool for the development of progranulin-modulating therapeutics.Neurobiol Dis2021
33750951Demonstrating the utility of flexible sequence queries against indexed short reads with FlexTyper.PLoS Comput Biol2021
34579793Biologically relevant transfer learning improves transcription factor binding prediction.Genome Biol2021
34078885Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.Nat Commun2021
34213677Secondary biogenic amine deficiencies: genetic etiology, therapeutic interventions, and clinical effects.Neurogenetics2021
33996490Adult GAMT deficiency: A literature review and report of two siblings.Mol Genet Metab Rep2021
33368787GeneBreaker: Variant simulation to improve the diagnosis of Mendelian rare genetic diseases.Hum Mutat2021
33446255Exome sequencing enables diagnosis of X-linked hypohidrotic ectodermal dysplasia in patient with eosinophilic esophagitis and severe atopy.Allergy Asthma Clin Immunol2021
32451166Deregulated Regulators: Disease-Causing cis Variants in Transcription Factor Genes.Trends Genet2020
31701148JASPAR 2020: update of the open-access database of transcription factor binding profiles.Nucleic Acids Res2020
33246824The variability conundrum in neurometabolic degenerative diseases.Mol Genet Metab2020
32917731Expression of Concern: Mechanisms underlying p53 regulation of <i>PIK3CA</i> transcription in ovarian surface epithelium and in ovarian cancer.J Cell Sci2020
32637154metPropagate: network-guided propagation of metabolomic information for prioritization of metabolic disease genes.NPJ Genom Med2020
32671069Multi-Omic Approach to Identify Phenotypic Modifiers Underlying Cerebral Demyelination in X-Linked Adrenoleukodystrophy.Front Cell Dev Biol2020
32391301Indigenous Genomic Databases: Pragmatic Considerations and Cultural Contexts.Front Public Health2020
32345345ExpansionHunter Denovo: a computational method for locating known and novel repeat expansions in short-read sequencing data.Genome Biol2020
30535356Development and user evaluation of a rare disease gene prioritization workflow based on cognitive ergonomics.J Am Med Inform Assoc2019
30062914New MiniPromoter Ple345 (NEFL) Drives Strong and Specific Expression in Retinal Ganglion Cells of Mouse and Primate Retina.Hum Gene Ther2019
31533632Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis.BMC Genomics2019
31492586Strabismus in Children With Intellectual Disability: Part of a Broader Motor Control Phenotype?Pediatr Neurol2019
31347689TFEA.ChIP: a tool kit for transcription factor binding site enrichment analysis capitalizing on ChIP-seq datasets.Bioinformatics2019
31602299Introduction to Genomic Analysis Workshop: A catalyst for engaging life-science researchers in high throughput analysis.F1000Res2019
31422819Bi-allelic GOT2 Mutations Cause a Treatable Malate-Aspartate Shuttle-Related Encephalopathy.Am J Hum Genet2019
30772522Curation and bioinformatic analysis of strabismus genes supports functional heterogeneity and proposes candidate genes with connections to RASopathies.Gene2019
30970188Glutaminase Deficiency Caused by Short Tandem Repeat Expansion in <i>GLS</i>.N Engl J Med2019
30542205Atypical cerebral palsy: genomics analysis enables precision medicine.Genet Med2019
30541050Gene expression models based on transcription factor binding events confer insight into functional cis-regulatory variants.Bioinformatics2019
28787087Bone health and SATB2-associated syndrome.Clin Genet2018
30103339Computational Analysis of Transcriptional Regulation Sites at the HTT Gene Locus.J Huntingtons Dis2018
29934305c-Myc is a novel <i>Leishmania</i> virulence factor by proxy that targets the host miRNA system and is essential for survival in human macrophages.J Biol Chem2018
29855387Genome-wide prediction of cis-regulatory regions using supervised deep learning methods.BMC Bioinformatics2018
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Collaborators

Anthony Mathelier
University of Oslo
Co-authored papers 29
David J Arenillas
BC Children's Hospital Research Institute, University of British Columbia
Co-authored papers 27
Oriol Fornes
BC Children's Hospital Research Institute, University of British Columbia
Co-authored papers 23
Boris Lenhard
MRC London Institute of Medical Sciences
Co-authored papers 23
Albin Sandelin
University of Copenhagen
Co-authored papers 18
Steven J M Jones
University of British Columbia
Co-authored papers 9
Dan Goldowitz
University of British Columbia
Co-authored papers 7
Robert A Holt
BC Cancer Research Institute
Co-authored papers 7
Claes Wahlestedt
Co-authored papers 6
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 6
Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 6
Timo Lassmann
Telethon Kids Institute, University of Western Australia
Co-authored papers 6
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 6
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 6
Sara Mostafavi
University of British Columbia and BC Children's Hospital
Co-authored papers 5
Linlea Armstrong
University of British Columbia
Co-authored papers 5
Andrew T Kwon
RIKEN Center for Integrative Medical Sciences (IMS)
Co-authored papers 5
Pär G Engström
Co-authored papers 5
Shannan J Ho Sui
Harvard T.H. Chan School of Public Health
Co-authored papers 5
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 5
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 4
Charles-Henri Lecellier
Institut de Genetique Moleculaire de Montpellier, University of Montpellier, CNRS
Co-authored papers 4
Erik Arner
RIKEN Center for Integrative Medical Sciences (IMS)
Co-authored papers 4
Bf Francis Ouellette
Ontario Institute for Cancer Research
Co-authored papers 4
Sohrab P Shah
Memorial Sloan Kettering Cancer Center
Co-authored papers 4
Michael S Kobor
University of British Columbia
Co-authored papers 4
Michael Detmar
Institute of Pharmaceutical Sciences, ETH Zurich
Co-authored papers 3
Xiaobei Zhao
University of Tennessee Health Science Center
Co-authored papers 3
Jay W Shin
Genome Institute of Singapore (GIS)
Co-authored papers 3
Paul Pavlidis
University of British Columbia
Co-authored papers 3
Release 1.2