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Author Details

Michael J Buck
Jacobs School of Medicine and Biomedical Sciences, University at Buffalo
2002
64
28
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
35234044Oral Microbiome Is Associated With Incident Hypertension Among Postmenopausal Women.J Am Heart Assoc2022
35533310Relationship between the subgingival microbiome and menopausal hormone therapy use: The Buffalo OsteoPerio study.J Periodontol2022
35912202Multimodal Dimension Reduction and Subtype Classification of Head and Neck Squamous Cell Tumors.Front Oncol2022
35173205Dietary carbohydrate intake is associated with the subgingival plaque oral microbiome abundance and diversity in a cohort of postmenopausal women.Sci Rep2022
33141988Subgingival microbiome is associated with alveolar bone loss measured 5 years later in postmenopausal women.J Periodontol2021
33784385A selection-based next generation sequencing approach to develop robust, genotype-specific mutation profiles in Saccharomyces cerevisiae.G3 (Bethesda)2021
33865440οNp63 is a pioneer factor that binds inaccessible chromatin and elicits chromatin remodeling.Epigenetics Chromatin2021
31477832Reactivation of super-enhancers by KLF4 in human Head and Neck Squamous Cell Carcinoma.Oncogene2020
32296927Pioneer factors and their in vitro identification methods.Mol Genet Genomics2020
32426495Transient inhibition of mTOR in human pluripotent stem cells enables robust formation of mouse-human chimeric embryos.Sci Adv2020
30409772Defining TP53 pioneering capabilities with competitive nucleosome binding assays.Genome Res2019
31722703Composition and diversity of the subgingival microbiome and its relationship with age in postmenopausal women: an epidemiologic investigation.BMC Oral Health2019
30010718A parallel computational framework for ultra-large-scale sequence clustering analysis.Bioinformatics2019
31236901Is the Oral Microbiome Associated with Blood Pressure in Older Women?High Blood Press Cardiovasc Prev2019
31306413Molecular dissection of the oncogenic role of ETS1 in the mesenchymal subtypes of head and neck squamous cell carcinoma.PLoS Genet2019
30346493SENSE: Siamese neural network for sequence embedding and alignment-free comparison.Bioinformatics2019
28774887Suppressed hepatic bile acid signalling despite elevated production of primary and secondary bile acids in NAFLD.Gut2018
30347640Substantial Differences in the Subgingival Microbiome Measured by 16S Metagenomics According to Periodontitis Status in Older Women.Dent J (Basel)2018
30518590Cohort profile: the Buffalo OsteoPerio microbiome prospective cohort study.BMJ Open2018
29693447Chronic kidney disease, uremic milieu, and its effects on gut bacterial microbiota dysbiosis.Am J Physiol Renal Physiol2018
29373083Gut microbiome may contribute to insulin resistance and systemic inflammation in obese rodents: a meta-analysis.Physiol Genomics2018
28931089Advanced glycation end products dietary restriction effects on bacterial gut microbiota in peritoneal dialysis patients; a randomized open label controlled trial.PLoS One2017
28182198A time-series analysis of altered histone H3 acetylation and gene expression during the course of MMAIII-induced malignant transformation of urinary bladder cells.Carcinogenesis2017
28978636EZH2 Modifies Sunitinib Resistance in Renal Cell Carcinoma by Kinome Reprogramming.Cancer Res2017
28535252Trypanosome RNA Editing Mediator Complex proteins have distinct functions in gRNA utilization.Nucleic Acids Res2017
28505376Evolutionary re-wiring of p63 and the epigenomic regulatory landscape in keratinocytes and its potential implications on species-specific gene expression and phenotypes.Nucleic Acids Res2017
26908922High-throughput sequencing of partially edited trypanosome mRNAs reveals barriers to editing progression and evidence for alternative editing.RNA2016
27917881Distinct and Shared Determinants of Cardiomyocyte Contractility in Multi-Lineage Competent Ethnically Diverse Human iPSCs.Sci Rep2016
25519701Sunitinib dose escalation overcomes transient resistance in clear cell renal cell carcinoma and is associated with epigenetic modifications.Mol Cancer Ther2015
26437933An accurate and efficient experimental approach for characterization of the complex oral microbiota.Microbiome2015
26251276A global analysis of the complex landscape of isoforms and regulatory networks of p63 in human cells and tissues.BMC Genomics2015
25923916Global Developmental Gene Programing Involves a Nuclear Form of Fibroblast Growth Factor Receptor-1 (FGFR1).PLoS One2015
25833190Disease-Associated Single-Nucleotide Polymorphisms From Noncoding Regions in Juvenile Idiopathic Arthritis Are Located Within or Adjacent to Functional Genomic Elements of Human Neutrophils and CD4+ T Cells.Arthritis Rheumatol2015
25879881An automated method for efficient, accurate and reproducible construction of RNA-seq libraries.BMC Res Notes2015
26020802MicroRNA analysis suggests an additional level of feedback regulation in the NF-κB signaling cascade.Oncotarget2015
25748434Chromatin mediation of a transcriptional memory effect in yeast.G3 (Bethesda)2015
24186201Alterations in chromatin accessibility and DNA methylation in clear cell renal cell carcinoma.Oncogene2014
25473421Chromatin accessibility: a window into the genome.Epigenetics Chromatin2014
25433490Role of chromatin and transcriptional co-regulators in mediating p63-genome interactions in keratinocytes.BMC Genomics2014
24889932Iron-responsive chromatin remodelling and MAPK signalling enhance adhesion in Candida albicans.Mol Microbiol2014
23748164FOXO1 regulates expression of a microRNA cluster on X chromosome.Aging (Albany NY)2013
23831030Facilitates chromatin transcription complex is an "accelerator" of tumor transformation and potential marker and target of aggressive cancers.Cell Rep2013
23821650An integrative approach to understanding the combinatorial histone code at functional elements.Bioinformatics2013
23891734Inhibition of monomethylarsonous acid (MMA(III))-induced cell malignant transformation through restoring dysregulated histone acetylation.Toxicology2013
23656909Discovering chromatin motifs using FAIRE sequencing and the human diploid genome.BMC Genomics2013
22302569ArchTEx: accurate extraction and visualization of next-generation sequence data.Bioinformatics2012
22559821Standardized collection of MNase-seq experiments enables unbiased dataset comparisons.BMC Mol Biol2012
22617168Key principles and clinical applications of "next-generation" DNA sequencing.Cancer Prev Res (Phila)2012
22573177Chromatin architectures at fission yeast transcriptional promoters and replication origins.Nucleic Acids Res2012
21552514The stress response factors Yap6, Cin5, Phd1, and Skn7 direct targeting of the conserved co-repressor Tup1-Ssn6 in S. cerevisiae.PLoS One2011
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Collaborators

Jonathan E Bard
University at Buffalo
Co-authored papers 13
Daniel I McSkimming
Co-authored papers 8
Michael J LaMonte
Co-authored papers 8
Satrajit Sinha
Jacobs School of Medicine and Biomedical Sciences, University at Buffalo
Co-authored papers 8
Jason D Lieb
The University of Chicago
Co-authored papers 7
Jason M Rizzo
University of Michigan ann arbor
Co-authored papers 6
Piotr A Mieczkowski
Co-authored papers 4
Rabi Yacoub
Co-authored papers 2
Rose-Anne Romano
State University of New York at Buffalo
Co-authored papers 2
Ruixin Zhu
Co-authored papers 2
Jennifer L Gerton
Stowers Institute for Medical Research
Co-authored papers 1
Girish N Nadkarni
Icahn School of Medicine at Mount Sinai
Co-authored papers 1
Sami Kilpinen
University of Helsinki
Co-authored papers 1
Wei Sun
Co-authored papers 1
Sean E Hanlon
Drew University, National Institutes of Health, Rutgers University New Brunswick, University of North Carolina at Chapel Hill
Co-authored papers 1
Ronald Nicholas Laribee
University of Tennessee Health Science Center
Co-authored papers 1
Brian D Strahl
University of North Carolina
Co-authored papers 1
Jianmin Wang
Roswell Park Comprehensive Cancer Center
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Larry D Mesner
Center for Public Health Genomics, University of Virginia
Co-authored papers 1
Itay Tirosh
Weizmann Institute of Medical Sciences
Co-authored papers 1
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 1
Kaiyu Jiang
University at Buffalo School of Medicine and Biomedical Sciences
Co-authored papers 1
Tao Liu
Co-authored papers 1
Chao Cheng
Baylor College of Medicine
Co-authored papers 1
John Cijiang He
Co-authored papers 1
Jian Feng
Co-authored papers 1
Jack F Greenblatt
College Street, University of Toronto
Co-authored papers 1
Yoichiro Shibata
Center for Genomic and Computational Biology, Duke University.
Co-authored papers 1
Bhargavi Rao
National Institute of Environmental Health Sciences
Co-authored papers 1
Rose O'Rourke
Co-authored papers 1
Release 1.2