Author details

Full Name

Daniel J Orton

Affiliation

ORCID

Career Start Year

2006

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37291876	A Simple and Flexible Infusion Platform for Automated Native Mass Spectrometry Analysis.		2023
37645907	Robust collection and processing for label-free single voxel proteomics.	bioRxiv	2023
37076550	LipidOz enables automated elucidation of lipid carbon-carbon double bond positions from ozone-induced dissociation mass spectrometry data.	Commun Chem	2023
37390828	Plasma protein biomarkers predict the development of persistent autoantibodies and type 1 diabetes 6Â months prior to the onset of autoimmunity.	Cell Rep Med	2023
37117207	PeakDecoder enables machine learning-based metabolite annotation and accurate profiling in multidimensional mass spectrometry measurements.	Nat Commun	2023
36394319	A Mineral-Doped Micromodel Platform Demonstrates Fungal Bridging of Carbon Hot Spots and Hyphal Transport of Mineral-Derived Nutrients.	mSystems	2022
35430813	DEIMoS: An Open-Source Tool for Processing High-Dimensional Mass Spectrometry Data.	Anal Chem	2022
34642644	A Pilot Study of Urine Proteomics in COVID-19-Associated Acute Kidney Injury.	Kidney Int Rep	2021
34145874	AutoCCS: automated collision cross-section calculation software for ion mobility spectrometry-mass spectrometry.	Bioinformatics	2021
34351778	Facile One-Pot Nanoproteomics for Label-Free Proteome Profiling of 50-1000 Mammalian Cells.	J Proteome Res	2021
34244696	Tutorial: best practices and considerations for mass-spectrometry-based protein biomarker discovery and validation.	Nat Protoc	2021
33425868	High-Throughput Large-Scale Targeted Proteomics Assays for Quantifying Pathway Proteins in <i>Pseudomonas putida</i> KT2440.	Front Bioeng Biotechnol	2020
31911630	Automated mass spectrometry imaging of over 2000 proteins from tissue sections at 100-Î¼m spatial resolution.	Nat Commun	2020
32639140	Automated Coupling of Nanodroplet Sample Preparation with Liquid Chromatography-Mass Spectrometry for High-Throughput Single-Cell Proteomics.	Anal Chem	2020
33136380	Assessing Collision Cross Section Calibration Strategies for Traveling Wave-Based Ion Mobility Separations in Structures for Lossless Ion Manipulations.	Anal Chem	2020
30829647	Glomerular filtrate proteins in acute cardiorenal syndrome.	JCI Insight	2019
29161511	A Customizable Flow Injection System for Automated, High Throughput, and Time Sensitive Ion Mobility Spectrometry and Mass Spectrometry Measurements.	Anal Chem	2018
30371667	Micropuncture of Bowman's Space in Mice Facilitated by 2 Photon Microscopy.	J Vis Exp	2018
29666158	Quality Control Analysis in Real-time (QC-ART): A Tool for Real-time Quality Control Assessment of Mass Spectrometry-based Proteomics Data.	Mol Cell Proteomics	2018
27958645	Comparing identified and statistically significant lipids and polar metabolites in 15-year old serum and dried blood spot samples for longitudinal studies.	Rapid Commun Mass Spectrom	2017
29568436	A structural examination and collision cross section database for over 500 metabolites and xenobiotics using drift tube ion mobility spectrometry.	Chem Sci	2017
28301728	Coupling Front-End Separations, Ion Mobility Spectrometry, and Mass Spectrometry For Enhanced Multidimensional Biological and Environmental Analyses.	Annu Rev Anal Chem (Palo Alto Calif)	2017
27604268	Enhancing glycan isomer separations with metal ions and positive and negative polarity ion mobility spectrometry-mass spectrometry analyses.	Anal Bioanal Chem	2017
27670688	Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry.	Mol Cell Proteomics	2016
29276770	SPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in biofluids.	Clin Mass Spectrom	2016
26745641	SNaPP: Simplified Nanoproteomics Platform for Reproducible Global Proteomic Analysis of Nanogram Protein Quantities.	Endocrinology	2016
27009517	Mass spectrometry-based monitoring of millisecond protein-ligand binding dynamics using an automated microfluidic platform.	Lab Chip	2016
28004771	Spatially-Resolved Proteomics: Rapid Quantitative Analysis of Laser Capture Microdissected Alveolar Tissue Samples.	Sci Rep	2016
26046661	Enhancing bottom-up and top-down proteomic measurements with ion mobility separations.	Proteomics	2015
26317212	Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants.	PLoS One	2015
26398520	Correction: Enrichment and Broad Representation of Plant Biomass-Degrading Enzymes in the Specialized Hyphal Swellings of Leucoagaricus gongylophorus, the Fungal Symbiont of Leaf-Cutter Ants.	PLoS One	2015
25192788	Microscale depletion of high abundance proteins in human biofluids using IgY14 immunoaffinity resin: analysis of human plasma and cerebrospinal fluid.	Anal Bioanal Chem	2014
24403597	Advancing the high throughput identification of liver fibrosis protein signatures using multiplexed ion mobility spectrometry.	Mol Cell Proteomics	2014
24335474	The identification of novel potential injury mechanisms and candidate biomarkers in renal allograft rejection by quantitative proteomics.	Mol Cell Proteomics	2014
24677814	Characterization of individual mouse cerebrospinal fluid proteomes.	Proteomics	2014
24611607	Signatures for mass spectrometry data quality.	J Proteome Res	2014
23494780	Automated immobilized metal affinity chromatography system for enrichment of Escherichia coli phosphoproteome.	Electrophoresis	2013
23423792	Mixed-isotope labeling with LC-IMS-MS for characterization of protein-protein interactions by chemical cross-linking.	J Am Soc Mass Spectrom	2013
23499924	Basophile: accurate fragment charge state prediction improves peptide identification rates.	Genomics Proteomics Bioinformatics	2013
23495885	Sources of technical variability in quantitative LC-MS proteomics: human brain tissue sample analysis.	J Proteome Res	2013
21504012	Formation of iron complexes from trifluoroacetic acid based liquid chromatography mobile phases as interference ions in liquid chromatography/electrospray ionization mass spectrometric analysis.	Rapid Commun Mass Spectrom	2011
21454597	Spatial phosphoprotein profiling reveals a compartmentalized extracellular signal-regulated kinase switch governing neurite growth and retraction.	J Biol Chem	2011
20000344	An LC-IMS-MS platform providing increased dynamic range for high-throughput proteomic studies.	J Proteome Res	2010
19371082	Combined pulsed-Q dissociation and electron transfer dissociation for identification and quantification of iTRAQ-labeled phosphopeptides.	Anal Chem	2009
18763275	Analysis of non-enzymatically glycated peptides: neutral-loss-triggered MS(3) versus multi-stage activation tandem mass spectrometry.	Rapid Commun Mass Spectrom	2008
18044960	Fully automated four-column capillary LC-MS system for maximizing throughput in proteomic analyses.	Anal Chem	2008
18412383	The influence of sample preparation and replicate analyses on HeLa Cell phosphoproteome coverage.	J Proteome Res	2008
18502191	Application of the accurate mass and time tag approach in studies of the human blood lipidome.	J Chromatogr B Analyt Technol Biomed Life Sci	2008
17105173	Chemically etched open tubular and monolithic emitters for nanoelectrospray ionization mass spectrometry.	Anal Chem	2006