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Author Details

Leah V Schaffer (CM4AI)
University of California San Diego
0000-0001-6339-9141
2017
29
14
Tools, proteomics
PMIDPaper TitleJournal TitlePublished Year
35657588Proteoform Analysis and Construction of Proteoform Families in Proteoform Suite.Methods Mol Biol2022
33074679Construction of Human Proteoform Families from 21 Tesla Fourier Transform Ion Cyclotron Resonance Mass Spectrometry Top-Down Proteomic Data.J Proteome Res2021
33683901Binary Classifier for Computing Posterior Error Probabilities in MetaMorpheus.J Proteome Res2021
34819669A multi-scale map of cell structure fusing protein images and interactions.Nature2021
34165955Advanced Strategies for Proton-Transfer Reactions Coupled with Parallel Ion Parking on a 21 T FT-ICR MS for Intact Protein Analysis.Anal Chem2021
34139169Mapping the multiscale structure of biological systems.Cell Syst2021
32584579Improving Proteoform Identifications in Complex Systems Through Integration of Bottom-Up and Top-Down Data.J Proteome Res2020
33542892Micromolded Carbon Paste Microelectrodes for Electrogenerated Chemiluminescent Detection on Microfluidic Devices.ChemElectroChem2020
31050378Identification and Quantification of Proteoforms by Mass Spectrometry.Proteomics2019
31451767A five-level classification system for proteoform identifications.Nat Methods2019
31479276Constructing Human Proteoform Families Using Intact-Mass and Top-Down Proteomics with a Multi-Protease Global Post-Translational Modification Discovery Database.J Proteome Res2019
31393705Intact-Mass Analysis Facilitating the Identification of Large Human Heart Proteoforms.Anal Chem2019
29195273Proteoform Suite: Software for Constructing, Quantifying, and Visualizing Proteoform Families.J Proteome Res2018
30180576Identification and Quantification of Murine Mitochondrial Proteoforms Using an Integrated Top-Down and Intact-Mass Strategy.J Proteome Res2018
29358085Compartmentalization of HP1 Proteins in Pluripotency Acquisition and Maintenance.Stem Cell Reports2018
29227670Expanding Proteoform Identifications in Top-Down Proteomic Analyses by Constructing Proteoform Families.Anal Chem2018
28968100Elucidating Escherichia coli Proteoform Families Using Intact-Mass Proteomics and a Global PTM Discovery Database.J Proteome Res2017
28248113Global Post-Translational Modification Discovery.J Proteome Res2017
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Collaborators

Lloyd M Smith
University of Wisconsin-Madison College of Letters and Sciences
Co-authored papers 15
Michael R Shortreed
University of Wisconsin-Madison
Co-authored papers 15
Mark Scalf
University of Wisconsin-Madison College of Letters and Sciences
Co-authored papers 8
Brian L Frey
University of Wisconsin-Madison, 1101 University Ave
Co-authored papers 7
Lissa C Anderson
Florida State University
Co-authored papers 4
Robert J Millikin
Morgridge Institute for Research
Co-authored papers 4
Anthony J Cesnik
University of Wisconsin-Madison
Co-authored papers 4
Yunxiang Dai
University of Wisconsin-Madison
Co-authored papers 3
Ying Ge
University of Wisconsin-Madison
Co-authored papers 3
Trisha Tucholski
University of Wisconsin-Madison, 1101 University Ave.
Co-authored papers 3
Stefan K Solntsev
University of Wisconsin-Madison
Co-authored papers 3
Neil L Kelleher
Northwestern University
Co-authored papers 2
Richard D LeDuc
Northwestern University
Co-authored papers 2
Trey Ideker (CM4AI)
University of California San Diego
Co-authored papers 2
Ryan T Fellers
Northwestern University
Co-authored papers 2
Paul M Thomas
Northwestern University
Co-authored papers 2
Christopher L Hendrickson
Florida State University
Co-authored papers 1
Juan Antonio Vizca??no
EMBL-European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 1
Zhe Wang
University of Oklahoma
Co-authored papers 1
Chad R Weisbrod
Florida State University
Co-authored papers 1
Ludivine Wacheul
Universite libre de Bruxelles (ULB)
Co-authored papers 1
Adriana Pitea
University of California San Diego
Co-authored papers 1
Jason F Kreisberg
University of California San Diego
Co-authored papers 1
Qiyao Li
The Second Hospital of Hebei Medical University
Co-authored papers 1
Jisoo Park
University of California San Diego san francisco
Co-authored papers 1
Rachel M Miller
University of Wisconsin-Madison
Co-authored papers 1
Jeffrey Shabanowitz
University of Virginia
Co-authored papers 1
John Lee
University of California San Diego
Co-authored papers 1
Katherine E Buxton
University of Wisconsin , 1101 University Avenue
Co-authored papers 1
Michael Chen
University of California San Diego
Co-authored papers 1
Release 1.2