Skip to Main Content

Author Details

Jeremy Goecks
Oregon Health & Science University
2010
35
17
PMIDPaper TitleJournal TitlePublished Year
37961410Machine learning links T cell function and spatial localization to neoadjuvant immunotherapy and clinical outcome in pancreatic cancer.bioRxiv2023
37961410Machine learning links T cell function and spatial localization to neoadjuvant immunotherapy and clinical outcome in pancreatic cancer.bioRxiv2023
34824477MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging.Nat Methods2022
35217711Single-cell spatial architectures associated with clinical outcome in head and neck squamous cell carcinoma.NPJ Precis Oncol2022
34824477MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging.Nat Methods2022
35243422An omic and multidimensional spatial atlas from serial biopsies of an evolving metastatic breast cancer.Cell Rep Med2022
35217711Single-cell spatial architectures associated with clinical outcome in head and neck squamous cell carcinoma.NPJ Precis Oncol2022
35243422An omic and multidimensional spatial atlas from serial biopsies of an evolving metastatic breast cancer.Cell Rep Med2022
34061826Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine.PLoS Comput Biol2021
34061826Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine.PLoS Comput Biol2021
33727309Leukocyte Heterogeneity in Pancreatic Ductal Adenocarcinoma: Phenotypic and Spatial Features Associated with Clinical Outcome.Cancer Discov2021
34667258Multiomics analysis of serial PARP inhibitor treated metastatic TNBC inform on rational combination therapies.NPJ Precis Oncol2021
33727309Leukocyte Heterogeneity in Pancreatic Ductal Adenocarcinoma: Phenotypic and Spatial Features Associated with Clinical Outcome.Cancer Discov2021
34667258Multiomics analysis of serial PARP inhibitor treated metastatic TNBC inform on rational combination therapies.NPJ Precis Oncol2021
31197310Cloud bursting galaxy: federated identity and access management.Bioinformatics2020
32246132A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer.Nat Genet2020
32243801How Machine Learning Will Transform Biomedicine.Cell2020
32122539High-dimensional multiplexed immunohistochemical characterization of immune contexture in human cancers.Methods Enzymol2020
32479607The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.Nucleic Acids Res2020
32585001Corrigendum: The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.Nucleic Acids Res2020
32497138G-OnRamp: Generating genome browsers to facilitate undergraduate-driven collaborative genome annotation.PLoS Comput Biol2020
32660935A long-read RNA-seq approach to identify novel transcripts of very large genes.Genome Res2020
31197310Cloud bursting galaxy: federated identity and access management.Bioinformatics2020
32660935A long-read RNA-seq approach to identify novel transcripts of very large genes.Genome Res2020
32585001Corrigendum: The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.Nucleic Acids Res2020
32122539High-dimensional multiplexed immunohistochemical characterization of immune contexture in human cancers.Methods Enzymol2020
32246132A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer.Nat Genet2020
32243801How Machine Learning Will Transform Biomedicine.Cell2020
32497138G-OnRamp: Generating genome browsers to facilitate undergraduate-driven collaborative genome annotation.PLoS Comput Biol2020
32479607The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.Nucleic Acids Res2020
31070714G-OnRamp: a Galaxy-based platform for collaborative annotation of eukaryotic genomes.Bioinformatics2019
31070714G-OnRamp: a Galaxy-based platform for collaborative annotation of eukaryotic genomes.Bioinformatics2019
31266770Innate αβ T Cells Mediate Antitumor Immunity by Orchestrating Immunogenic Macrophage Programming.Cancer Discov2019
31266770Innate αβ T Cells Mediate Antitumor Immunity by Orchestrating Immunogenic Macrophage Programming.Cancer Discov2019
29790989The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.Nucleic Acids Res2018
34386295Federated Galaxy: Biomedical Computing at the Frontier.IEEE Int Conf Cloud Comput2018
30596645Enabling precision medicine via standard communication of HTS provenance, analysis, and results.PLoS Biol2018
29953862Practical Computational Reproducibility in the Life Sciences.Cell Syst2018
29688462Biology Needs Evolutionary Software Tools: Let's Build Them Right.Mol Biol Evol2018
29790989The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.Nucleic Acids Res2018
34386295Federated Galaxy: Biomedical Computing at the Frontier.IEEE Int Conf Cloud Comput2018
29953862Practical Computational Reproducibility in the Life Sciences.Cell Syst2018
30596645Enabling precision medicine via standard communication of HTS provenance, analysis, and results.PLoS Biol2018
29688462Biology Needs Evolutionary Software Tools: Let's Build Them Right.Mol Biol Evol2018
26810135Impact of germline and somatic missense variations on drug binding sites.Pharmacogenomics J2017
26810135Impact of germline and somatic missense variations on drug binding sites.Pharmacogenomics J2017
27974626Biocompute Objects-A Step towards Evaluation and Validation of Biomedical Scientific Computations.PDA J Pharm Sci Technol2017
27974626Biocompute Objects-A Step towards Evaluation and Validation of Biomedical Scientific Computations.PDA J Pharm Sci Technol2017
27137889The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update.Nucleic Acids Res2016
27137889The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update.Nucleic Acids Res2016
  • 1 - 50 of 70

Recommended Authors

University of Oslo
Career Start Year 2017
Number of shared co-authors 0
University of Melbourne
Career Start Year 2013
Number of shared co-authors 6
Southwestern Medical Center, University of Texas
Career Start Year 2012
Number of shared co-authors 4
School of Pharmacy, University of Southern California
Career Start Year 2011
Number of shared co-authors 0
Center for Computational Biology and Bioinformatics, University of California
Career Start Year 2009
Number of shared co-authors 0
University of Maryland College Park, College Park
Career Start Year 2009
Number of shared co-authors 3
Stockholm University
Career Start Year 2008
Number of shared co-authors 3
Children's Hospital of Philadelphia
Career Start Year 2007
Number of shared co-authors 2
University of Hamburg
Career Start Year 2006
Number of shared co-authors 0
The University of Hong Kong
Career Start Year 2006
Number of shared co-authors 0
Centre de Recherche du CHU de Quebec-Universite, Universite Laval
Career Start Year 2005
Number of shared co-authors 0
Harvard T.H. Chan School of Public Health
Career Start Year 2004
Number of shared co-authors 4
Moores Cancer Center, University of California San Diego
Career Start Year 2003
Number of shared co-authors 5
Wageningen University & Research
Career Start Year 2001
Number of shared co-authors 9
The Scripps Research Institute
Career Start Year 2001
Number of shared co-authors 12
University of Toronto
Career Start Year 2000
Number of shared co-authors 11
European Bioinformatics Institute
Career Start Year 2000
Number of shared co-authors 16
Ontario Institute for Cancer Research
Career Start Year 1999
Number of shared co-authors 0
Institute for Systems Biology
Career Start Year 1998
Number of shared co-authors 0
University of British Columbia
Career Start Year 1995
Number of shared co-authors 21
Data Science Institute, University of Arizona
Career Start Year 1995
Number of shared co-authors 0
Massachusetts Institute of Technology
Career Start Year 1994
Number of shared co-authors 1
University of Lausanne
Career Start Year 1994
Number of shared co-authors 6
University of California San Diego
Career Start Year 1992
Number of shared co-authors 11
Center for Computational Biomedicine, Harvard Medical School
Career Start Year 1991
Number of shared co-authors 5
Yale University
Career Start Year 1991
Number of shared co-authors 8
Duke Clinical Research Institute, Duke University
Career Start Year 1987
Number of shared co-authors 2
Ontario Institute for Cancer Research
Career Start Year 1986
Number of shared co-authors 0
Ontario Institute for Cancer Research, University Avenue
Career Start Year 1986
Number of shared co-authors 18
Lawrence Berkeley National Laboratory
Career Start Year 1985
Number of shared co-authors 4

Collaborators

Johns Hopkins University
Co-authored papers 14
The Pennsylvania State University, University Park
Co-authored papers 9
Johns Hopkins University
Co-authored papers 6
Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic
Co-authored papers 5
Oregon Health and Science University
Co-authored papers 4
Johns Hopkins University
Co-authored papers 4
The Pennsylvania State University, University Park
Co-authored papers 3
Institut Curie, PSL Research University, CNRS UMR 5, INSERM U934
Co-authored papers 3
Oregon Health and Science University
Co-authored papers 3
Co-authored papers 3
Clinical Bioinformatics Group, Erasmus Medical Center
Co-authored papers 2
Co-authored papers 2
Oregon Health and Science University
Co-authored papers 2
Co-authored papers 2
Co-authored papers 2
Knight Cancer Institute, Oregon Health & Science University
Co-authored papers 2
Oregon Health Sciences University
Co-authored papers 2
Knight Cancer Institute, Oregon Health Sciences University
Co-authored papers 2
Co-authored papers 1
Co-authored papers 1
Co-authored papers 1
University of Manchester
Co-authored papers 1
University of Colorado - Anschutz Medical Campus
Co-authored papers 1
Acibadem University
Co-authored papers 1
University of Maryland School of Medicine, Institute for Genome Sciences
Co-authored papers 1
Co-authored papers 1
Icahn School of Medicine
Co-authored papers 1
Co-authored papers 1
Co-authored papers 1
Washington University
Co-authored papers 1