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Author Details

Mohan Babu
University of Regina
2004
113
32
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37440478Identification and characterization of protein interactions with the major Niemann-Pick type C disease protein in yeast reveals pathways of therapeutic potential.Genetics2023
37147430E. coli allantoinase is activated by the downstream metabolic enzyme, glycerate kinase, and stabilizes the putative allantoin transporter by direct binding.Sci Rep2023
37211293Sanitation enzymes: Exquisite surveillance of the noncanonical nucleotide pool to safeguard the genetic blueprint.Semin Cancer Biol2023
37108900A Correlation between 3'-UTR of <i>OXA1</i> Gene and Yeast Mitochondrial Translation.J Fungi (Basel)2023
35139916Adenosine A1 receptor ligands bind to α-synuclein: implications for α-synuclein misfolding and α-synucleinopathy in Parkinson's disease.Transl Neurodegener2022
35616533Development of a Method Combining Peptidiscs and Proteomics to Identify, Stabilize, and Purify a Detergent-Sensitive Membrane Protein Assembly.J Proteome Res2022
35835781Auxotrophic and prototrophic conditional genetic networks reveal the rewiring of transcription factors in Escherichia coli.Nat Commun2022
35669347HPiP: an R/Bioconductor package for predicting host-pathogen protein-protein interactions from protein sequences using ensemble machine learning approach.Bioinform Adv2022
36004308A computational approach to rapidly design peptides that detect SARS-CoV-2 surface protein S.NAR Genom Bioinform2022
35156780CFTR interactome mapping using the mammalian membrane two-hybrid high-throughput screening system.Mol Syst Biol2022
33436616Functional cooperativity between the trigger factor chaperone and the ClpXP proteolytic complex.Nat Commun2021
33795741Toward the discovery of biological functions associated with the mechanosensor Mtl1p of Saccharomyces cerevisiae via integrative multi-OMICs analysis.Sci Rep2021
33521598From fuzziness to precision medicine: on the rapidly evolving proteomics with implications in mitochondrial connectivity to rare human disease.iScience2021
33895137ZapG (YhcB/DUF1043), a novel cell division protein in gamma-proteobacteria linking the Z-ring to septal peptidoglycan synthesis.J Biol Chem2021
35062264The Thiazole-5-Carboxamide GPS491 Inhibits HIV-1, Adenovirus, and Coronavirus Replication by Altering RNA Processing/Accumulation.Viruses2021
34590268Quantitative Genetic Screens for Mapping Bacterial Pathways and Functional Networks.Methods Mol Biol2021
34430814A panoramic view of proteomics and multiomics in precision health.iScience2021
34582199Human-Soybean Allergies: Elucidation of the Seed Proteome and Comprehensive Protein-Protein Interaction Prediction.J Proteome Res2021
34276775Bioinformatic Analysis of Temporal and Spatial Proteome Alternations During Infections.Front Genet2021
34244791The conserved Tpk1 regulates non-homologous end joining double-strand break repair by phosphorylation of Nej1, a homolog of the human XLF.Nucleic Acids Res2021
31504172A Gaussian process-based definition reveals new and bona fide genetic interactions compared to a multiplicative model in the Gram-negative Escherichia coli.Bioinformatics2020
31986926Misconnecting the dots: altered mitochondrial protein-protein interactions and their role in neurodegenerative disorders.Expert Rev Proteomics2020
33033576Mitochondria under the spotlight: On the implications of mitochondrial dysfunction and its connectivity to neuropsychiatric disorders.Comput Struct Biotechnol J2020
32853540BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain.Cell Syst2020
32596240Exploring the Impact of <i>PARK2</i> Mutations on the Total and Mitochondrial Proteome of Human Skin Fibroblasts.Front Cell Dev Biol2020
32785068Lithium Chloride Sensitivity in Yeast and Regulation of Translation.Int J Mol Sci2020
32641451Protein Interactions of the Mechanosensory Proteins Wsc2 and Wsc3 for Stress Resistance in <i>Saccharomyces cerevisiae</i>.G3 (Bethesda)2020
32639961Sensitivity of yeast to lithium chloride connects the activity of YTA6 and YPR096C to translation of structured mRNAs.PLoS One2020
33008596Deletion of yeast TPK1 reduces the efficiency of non-homologous end joining DNA repair.Biochem Biophys Res Commun2020
32325033BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain.Cell Syst2020
32135169HERG channel and cancer: A mechanistic review of carcinogenic processes and therapeutic potential.Biochim Biophys Acta Rev Cancer2020
30660105In Silico Engineering of Synthetic Binding Proteins from Random Amino Acid Sequences.iScience2019
31844052Chemical-genetic profiling reveals limited cross-resistance between antimicrobial peptides with different modes of action.Nat Commun2019
31754640ClpP protease activation results from the reorganization of the electrostatic interaction networks at the entrance pores.Commun Biol2019
31452137A Tag-Based Affinity Purification Mass Spectrometry Workflow for Systematic Isolation of the Human Mitochondrial Protein Complexes.Adv Exp Med Biol2019
31364989Profiling the <i>Escherichia coli</i> membrane protein interactome captured in Peptidisc libraries.Elife2019
31536960Rewiring of the Human Mitochondrial Interactome during Neuronal Reprogramming Reveals Regulators of the Respirasome and Neurogenesis.iScience2019
30733383Identification and Functional Testing of Novel Interacting Protein Partners for the Stress Sensors Wsc1p and Mid2p of <i>Saccharomyces cerevisiae</i>.G3 (Bethesda)2019
29176613Global landscape of cell envelope protein complexes in Escherichia coli.Nat Biotechnol2018
30126533Acyldepsipeptide Analogs Dysregulate Human Mitochondrial ClpP Protease Activity and Cause Apoptotic Cell Death.Cell Chem Biol2018
30231023Heavy metal sensitivities of gene deletion strains for ITT1 and RPS1A connect their activities to the expression of URE2, a key gene involved in metal detoxification in yeast.PLoS One2018
30089654The uridylyltransferase GlnD and tRNA modification GTPase MnmE allosterically control <i>Escherichia coli</i> folylpoly-γ-glutamate synthase FolC.J Biol Chem2018
30380468Chromatographic separation strategies for precision mass spectrometry to study protein-protein interactions and protein phosphorylation.J Chromatogr B Analyt Technol Biomed Life Sci2018
29554091Zinc oxide and silver nanoparticles toxicity in the baker's yeast, Saccharomyces cerevisiae.PLoS One2018
29700392EPHB6 augments both development and drug sensitivity of triple-negative breast cancer tumours.Oncogene2018
29354107Metabolic Adaptation of a C-Terminal Protease A-Deficient <i>Rhizobium leguminosarum</i> in Response to Loss of Nutrient Transport.Front Microbiol2018
29659649Systems analysis of the genetic interaction network of yeast molecular chaperones.Mol Omics2018
29229699The Nitrogen Regulatory PII Protein (GlnB) and <i>N</i>-Acetylglucosamine 6-Phosphate Epimerase (NanE) Allosterically Activate Glucosamine 6-Phosphate Deaminase (NagB) in Escherichia coli.J Bacteriol2018
28987344Uncharacterized ORF HUR1 influences the efficiency of non-homologous end-joining repair in Saccharomyces cerevisiae.Gene2018
29177666Computational Analysis of the Chaperone Interaction Networks.Methods Mol Biol2018
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Collaborators

University of Regina
Co-authored papers 44
Boston University School of Medicine, Boston University
Co-authored papers 32
University of Regina
Co-authored papers 26
Ottawa Institute of Systems Biology, Carleton University
Co-authored papers 24
University of Regina
Co-authored papers 22
College Street, University of Toronto
Co-authored papers 20
Agriculture and Agri-Food Canada
Co-authored papers 19
University of Regina
Co-authored papers 18
University of Regina
Co-authored papers 16
Department of Biology and Ottawa Institute of Systems Biology, Carleton University
Co-authored papers 16
University of Toronto, University of Regina
Co-authored papers 15
University of Ottawa
Co-authored papers 14
Ottawa Institute of Systems Biology, University of Ottawa, Carleton University
Co-authored papers 14
University of Toronto, Canada Mediterranean Institute for Life Sciences
Co-authored papers 14
University of Northern British Columbia
Co-authored papers 12
Carleton University
Co-authored papers 12
Bhabha Atomic Research Centre
Co-authored papers 11
University of Toronto
Co-authored papers 10
West China Hospital, Sichuan University
Co-authored papers 9
The Hospital for Sick Children
Co-authored papers 8
Center for the Study of Biological Complexity, Virginia Commonwealth University
Co-authored papers 7
University of Regina
Co-authored papers 7
Sprott Center for Stem Cell Research, Ottawa Hospital Research Institute
Co-authored papers 7
Carleton University
Co-authored papers 6
University of Regina
Co-authored papers 6
University of Toronto
Co-authored papers 6
Center for the Study of Biological Complexity, Virginia Commonwealth University
Co-authored papers 5
University of California at San Diego
Co-authored papers 5
University of California at San Diego
Co-authored papers 5
University of Toronto
Co-authored papers 5