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Author Details

Melissa L Smith
University of Louisville
2016
55
19
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36330812The Assembled Genome of the Stroke-Prone Spontaneously Hypertensive Rat.Hypertension2023
37479682Genetic variation in the immunoglobulin heavy chain locus shapes the human antibody repertoire.Nat Commun2023
37546854Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.bioRxiv2023
37379584HIV-Positive Liver Transplant Does not Alter the Latent Viral Reservoir in Recipients With Antiretroviral Therapy-Suppressed HIV.J Infect Dis2023
37066424Persistent SARS-CoV-2 Infection in a Multiple Sclerosis Patient on Ocrelizumab: A Case Report.Res Sq2023
37027017FLAIRR-Seq: A Method for Single-Molecule Resolution of Near Full-Length Antibody H Chain Repertoires.J Immunol2023
36539592Characterization of the immunoglobulin lambda chain locus from diverse populations reveals extensive genetic variation.Genes Immun2023
36345940The effect of induction immunosuppression for kidney transplant on the latent HIV reservoir.JCI Insight2022
35768876Deep oncopanel sequencing reveals within block position-dependent quality degradation in FFPE processed samples.Genome Biol2022
35543507mRatBN7.2: familiar and unfamiliar features of a new rat genome reference assembly.Physiol Genomics2022
35720344A BALB/c IGHV Reference Set, Defined by Haplotype Analysis of Long-Read VDJ-C Sequences From F1 (BALB/c x C57BL/6) Mice.Front Immunol2022
35413274Klebsiella pneumoniae induces host metabolic stress that promotes tolerance to pulmonary infection.Cell Metab2022
36778049Targeted long-read sequencing facilitates phased diploid assembly and genotyping of the human T cell receptor alpha, delta, and beta loci.Cell Genom2022
36630696Integration of Single-Cell Transcriptomics With a High Throughput Functional Screening Assay to Resolve Cell Type, Growth Kinetics, and Stemness Heterogeneity Within the Comma-1D Cell Line.Front Genet2022
36307868Reemergence of pathogenic, autoantibody-producing B cell clones in myasthenia gravis following B cell depletion therapy.Acta Neuropathol Commun2022
36161486Reference long-read isoform-aware transcriptomes of 4 human peripheral blood lymphocyte subsets.G3 (Bethesda)2022
33252647Real-Time Investigation of a Large Nosocomial Influenza A Outbreak Informed by Genomic Epidemiology.Clin Infect Dis2021
33522489In-host population dynamics of <i>Mycobacterium tuberculosis</i> complex during active disease.Elife2021
33762610Long read, isoform aware sequencing of mouse nucleus accumbens after chronic cocaine treatment.Sci Rep2021
33846644Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology.Nat Biotechnol2021
33863344Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions.Genome Biol2021
33658521Staphylococcus aureus induces an itaconate-dominated immunometabolic response that drives biofilm formation.Nat Commun2021
34381049Downregulation of exhausted cytotoxic T cells in gene expression networks of multisystem inflammatory syndrome in children.Nat Commun2021
34103497Molecular evidence of SARS-CoV-2 in New York before the first pandemic wave.Nat Commun2021
34103093Unbiased profiling of CRISPR RNA-guided transposition products by long-read sequencing.Mob DNA2021
34368846Modified methicillin-resistant Staphylococcus aureus detected in neonatal intensive care patients.J Antimicrob Chemother2021
32393825ORF Capture-Seq as a versatile method for targeted identification of full-length isoforms.Nat Commun2020
32033143Integrated Genome-Wide Analysis of an Isogenic Pair of <i>Pseudomonas aeruginosa</i> Clinical Isolates with Differential Antimicrobial Resistance to Ceftolozane/Tazobactam, Ceftazidime/Avibactam, and Piperacillin/Tazobactam.Int J Mol Sci2020
31937643Cell-to-Cell Variation in Defective Virus Expression and Effects on Host Responses during Influenza Virus Infection.mBio2020
31898844Elucidation of de novo small insertion/deletion biology with parent-of-origin phasing.Hum Mutat2020
31923396Slow Delivery Immunization Enhances HIV Neutralizing Antibody and Germinal Center Responses via Modulation of Immunodominance.Cell2020
32066683Genetic associations with clozapine-induced myocarditis in patients with schizophrenia.Transl Psychiatry2020
33198787PathoSPOT genomic epidemiology reveals under-the-radar nosocomial outbreaks.Genome Med2020
32909006Cytotoxic lymphocytes are dysregulated in multisystem inflammatory syndrome in children.medRxiv2020
32179909Recurrent IDH mutations in high-grade meningioma.Neuro Oncol2020
32471856Introductions and early spread of SARS-CoV-2 in the New York City area.Science2020
32271902Diversity of peripheral blood human NK cells identified by single-cell RNA sequencing.Blood Adv2020
32193690Epigenetic preconditioning with decitabine sensitizes glioblastoma to temozolomide via induction of MLH1.J Neurooncol2020
31080066Slow Delivery Immunization Enhances HIV Neutralizing Antibody and Germinal Center Responses via Modulation of Immunodominance.Cell2019
31699932Double <i>PIK3CA</i> mutations in cis increase oncogenicity and sensitivity to PI3Kα inhibitors.Science2019
31660395Blurred Molecular Epidemiological Lines Between the Two Dominant Methicillin-Resistant <i>Staphylococcus aureus</i> Clones.Open Forum Infect Dis2019
31441114A comparison of immunoglobulin IGHV, IGHD and IGHJ genes in wild-derived and classical inbred mouse strains.Immunol Cell Biol2019
31201313High-coverage, long-read sequencing of Han Chinese trio reference samples.Sci Data2019
31012313Mce3R Stress-Resistance Pathway Is Vulnerable to Small-Molecule Targeting That Improves Tuberculosis Drug Activities.ACS Infect Dis2019
29545792Coupling of Single Molecule, Long Read Sequencing with IMGT/HighV-QUEST Analysis Expedites Identification of SIV gp140-Specific Antibodies from scFv Phage Display Libraries.Front Immunol2018
30177761Influenza virus infection causes global RNAPII termination defects.Nat Struct Mol Biol2018
30429615Improved reference genome of Aedes aegypti informs arbovirus vector control.Nature2018
30543621Full-Length Envelope Analyzer (FLEA): A tool for longitudinal analysis of viral amplicons.PLoS Comput Biol2018
28049853Genetic stability of genome-scale deoptimized RNA virus vaccine candidates under selective pressure.Proc Natl Acad Sci U S A2017
28385830Whole-Genome Sequences of <i>Burkholderia pseudomallei</i> Isolates Exhibiting Decreased Meropenem Susceptibility.Genome Announc2017
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Collaborators

Icahn School of Medicine at Mount Sinai
Co-authored papers 28
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Co-authored papers 8
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University of Louisville School of Medicine
Co-authored papers 7
Co-authored papers 6
Co-authored papers 6
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Co-authored papers 5
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Co-authored papers 4
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Co-authored papers 3
Winthrop P. Rockefeller Cancer Institute, University of Arkansas for Medical Sciences
Co-authored papers 3
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Immuneering Corporation
Co-authored papers 3
Icahn School of Medicine at Mount Sinai
Co-authored papers 3
Icahn School of Medicine at Mount Sinai
Co-authored papers 3
Stanford University
Co-authored papers 3
Icahn School of Medicine at Mount Sinai
Co-authored papers 3
Co-authored papers 3
Department of Bioinformatics and Clinical Systems
Co-authored papers 3
Icahn School of Medicine at Mount Sinai.
Co-authored papers 3
National Center for Toxicological Research
Co-authored papers 3
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Co-authored papers 2
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Institute for Molecular Medicine Finland (FIMM), University of Helsinki
Co-authored papers 2
Chongqing Aier Eye Hospital
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National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 2
Icahn School of Medicine at Mount Sinai
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