Author details

Full Name

Arthur L Delcher

Affiliation

Center for Computational Biology, Johns Hopkins School of Medicine

ORCID

Career Start Year

1993

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
29373581	MUMmer4: A fast and versatile genome alignment system.	PLoS Comput Biol	2018
28351419	New var reconstruction algorithm exposes high var sequence diversity in a single geographic location in Mali.	Genome Med	2017
22199379	Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies.	Brief Bioinform	2013
22147368	GAGE: A critical evaluation of genome assemblies and assembly algorithms.	Genome Res	2012
22102569	Gene prediction with Glimmer for metagenomic sequences augmented by classification and clustering.	Nucleic Acids Res	2012
21186353	The genome of woodland strawberry (Fragaria vesca).	Nat Genet	2011
21784931	Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.	J Bacteriol	2011
21483493	Core gene set as the basis of multilocus sequence analysis of the subclass Actinobacteridae.	PLoS One	2011
20508146	Assembly of large genomes using second-generation sequencing.	Genome Res	2010
20833805	Genome sequence of the dioxin-mineralizing bacterium Sphingomonas wittichii RW1.	J Bacteriol	2010
19393038	A whole-genome assembly of the domestic cow, Bos taurus.	Genome Biol	2009
19606141	The genome of the blood fluke Schistosoma mansoni.	Nature	2009
19805156	Triplet repeat length bias and variation in the human transcriptome.	Proc Natl Acad Sci U S A	2009
19429899	Sim4cc: a cross-species spliced alignment program.	Nucleic Acids Res	2009
18452608	Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A.	BMC Genomics	2008
18952627	Aggressive assembly of pyrosequencing reads with mates.	Bioinformatics	2008
18432245	The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).	Nature	2008
17218520	Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis.	Science	2007
17994087	Evolution of genes and genomes on the Drosophila phylogeny.	Nature	2007
18070356	High-throughput sequence alignment using Graphics Processing Units.	BMC Bioinformatics	2007
17642473	A unified model explaining the offsets of overlapping and near-overlapping prokaryotic genes.	Mol Biol Evol	2007
17885136	Draft genome of the filarial nematode parasite Brugia malayi.	Science	2007
17324286	Minimus: a fast, lightweight genome assembler.	BMC Bioinformatics	2007
17237039	Identifying bacterial genes and endosymbiont DNA with Glimmer.	Bioinformatics	2007
16267142	The Trypanosoma cruzi L1Tc and NARTc non-LTR retrotransposons show relative site specificity for insertion.	Mol Biol Evol	2006
16933976	Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote.	PLoS Biol	2006
15667658	Efficient decoding algorithms for generalized hidden Markov model gene finders.	BMC Bioinformatics	2005
15998463	Correction: Serendipitous discovery of Wolbachia genomes in multiple Drosophila species.	Genome Biol	2005
16020725	The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease.	Science	2005
16020724	Comparative genomics of trypanosomatid parasitic protozoa.	Science	2005
15774024	Serendipitous discovery of Wolbachia genomes in multiple Drosophila species.	Genome Biol	2005
14759262	Versatile and open software for comparing large genomes.	Genome Biol	2004
15579242	A preprocessor for shotgun assembly of large genomes.	J Comput Biol	2004
15247098	DAGchainer: a tool for mining segmental genome duplications and synteny.	Bioinformatics	2004
15364903	Human, mouse, and rat genome large-scale rearrangements: stability versus speciation.	Genome Res	2004
15383210	Comparative genome assembly.	Brief Bioinform	2004
14769938	Whole-genome shotgun assembly and comparison of human genome assemblies.	Proc Natl Acad Sci U S A	2004
12824409	PROBEmer: A web-based software tool for selecting optimal DNA oligos.	Nucleic Acids Res	2003
18428693	Using MUMmer to identify similar regions in large sequence sets.	Curr Protoc Bioinformatics	2003
14512627	The dog genome: survey sequencing and comparative analysis.	Science	2003
14500829	Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.	Nucleic Acids Res	2003
12034836	Fast algorithms for large-scale genome alignment and comparison.	Nucleic Acids Res	2002
12364791	The genome sequence of the malaria mosquito Anopheles gambiae.	Science	2002
12218036	Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains.	J Bacteriol	2002
12040188	A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome.	Science	2002
11181995	The sequence of the human genome.	Science	2001
11473002	Design of a compartmentalized shotgun assembler for the human genome.	Bioinformatics	2001
10731133	A whole-genome assembly of Drosophila.	Science	2000
10842737	Modeling splice sites with Bayes networks.	Bioinformatics	2000
10731132	The genome sequence of Drosophila melanogaster.	Science	2000

1 - 50 of 56

Salvador Capella-Gutierrez

Spanish National Bioinformatics Institute (INB/ELIXIR-ES)

Career Start Year 2009

Number of shared co-authors 12

Jared T Simpson

Ontario Institute for Cancer Research

Career Start Year 2009

Number of shared co-authors 18

Jaebum Kim

Konkuk University

Career Start Year 2007

Number of shared co-authors 20

Gang Fang

Icahn School of Medicine at Mount Sinai

Career Start Year 2005

Number of shared co-authors 11

Christophe Dessimoz

University of Lausanne

Career Start Year 2005

Number of shared co-authors 8

Joshua Orvis

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 2004

Number of shared co-authors 48

Alice C McHardy

Computational Biology of Infection Research, Helmholtz Centre for Infection Research

Career Start Year 2003

Number of shared co-authors 9

Bernard Suh

Center for Biomolecular Science and Engineering, University of California

Career Start Year 2002

Number of shared co-authors 39

Alexandre Souvorov

Career Start Year 2002

Number of shared co-authors 34

Martin C Frith

Artificial Intelligence Research Center, University of Tokyo

Career Start Year 2001

Number of shared co-authors 6

Paramvir S Dehal

Lawrence Berkeley National Laboratory

Career Start Year 2001

Number of shared co-authors 9

Tyler Alioto

Universitat de Barcelona (UB)

Career Start Year 2001

Number of shared co-authors 25

Jeong-Hyeon Choi

National Marine Biodiversity Institute of Korea

Career Start Year 2000

Number of shared co-authors 18

Weizhong Li

J. Craig Venter Institute

Career Start Year 2000

Number of shared co-authors 14

Haixu Tang

Indiana University

Career Start Year 2000

Number of shared co-authors 9

C Titus Brown

University of California davis

Career Start Year 1999

Number of shared co-authors 21

Anton Nekrutenko

The Pennsylvania State University, University Park

Career Start Year 1998

Number of shared co-authors 38

Jeremy Buhler

Washington University in St. Louis

Career Start Year 1997

Number of shared co-authors 1

Burkhard Morgenstern

Institute of Microbiology and Genetics

Career Start Year 1996

Number of shared co-authors 23

Richa Agarwala

National Center for Biotechnology Information, National Institutes of Health

Career Start Year 1995

Number of shared co-authors 35

Terry Gaasterland

Scripps Institution of Oceanography, University of California San Diego

Career Start Year 1994

Number of shared co-authors 20

Inna Dubchak

Lawrence Berkeley National Laboratory

Career Start Year 1993

Number of shared co-authors 58

Martijn A Huynen

Radboud University Medical Centre Nijmegen

Career Start Year 1992

Number of shared co-authors 6

Erik L L Sonnhammer

Stockholm University

Career Start Year 1992

Number of shared co-authors 5

Asaf Salamov

US Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory

Career Start Year 1991

Number of shared co-authors 18

Pavel A Pevzner

University of California

Career Start Year 1987

Number of shared co-authors 51

David Haussler

Genomics Institute, University of California Santa Cruz

Career Start Year 1986

Number of shared co-authors 83

Bruce W Birren

Broad Institute of MIT and Harvard

Career Start Year 1983

Number of shared co-authors 91

William R Pearson

University of Virginia

Career Start Year 1974

Number of shared co-authors 1

Richard Durbin

University of Cambridge

Career Start Year 1964

Number of shared co-authors 78

row(s) 1 - 30 of 30

Steven L Salzberg

Center for Computational Biology, Johns Hopkins University

Co-authored papers 39

Jennifer R Wortman

Broad Institute of MIT and Harvard

Co-authored papers 12

Michael C Schatz

Johns Hopkins University

Co-authored papers 11

Mihai Pop

Co-authored papers 11

Adam M Phillippy

National Human Genome Research Institute, National Institutes of Health

Co-authored papers 10

Owen White

Institute for Genome Sciences, University of Maryland School of Medicine

Co-authored papers 10

Karin A Remington

The J. Craig Venter Institute.

Co-authored papers 9

J C Venter

The J. Craig Venter Institute

Co-authored papers 9

Claire M Fraser

Institute for Genome Sciences, University of Maryland School of Medicine

Co-authored papers 9

Brian J Haas

Broad Institute of MIT and Harvard

Co-authored papers 9

Clark Mobarry

Co-authored papers 8

Granger G Sutton

J. Craig Venter Institute

Co-authored papers 8

Aaron L Halpern

Illumina Inc.

Co-authored papers 8

Eugene W Myers

Max Planck Institute of Molecular Cell Biology and Genetics

Co-authored papers 8

Ian Dew

Co-authored papers 7

Zhongwu Lai

Oncology R&D

Co-authored papers 6

Deborah Nusskern

Euclid Diagnostics LLC

Co-authored papers 6

Mark D Adams

Case Western Reserve University School of Medicine

Co-authored papers 6

Saul Kravitz

Co-authored papers 6

Qi Zhao

Yunnan Institute of Tropical Crops

Co-authored papers 6

Mihaela Pertea

Center for Computational Biology, Johns Hopkins University

Co-authored papers 6

Knut Reinert

Institut fur Informatik, Freie Universitat Berlin

Co-authored papers 6

Simon Kasif

Boston University

Co-authored papers 6

Eli Venter

Vanderbilt University, Columbia University Medical Center

Co-authored papers 5

Xiangqun H Zheng

Zibo First Hospital

Co-authored papers 5

Elodie Ghedin

National Institute of Allergy and Infectious Diseases, National Institutes of Health

Co-authored papers 5

Douglas B Rusch

Center for Genomics and Bioinformatics, Indiana University

Co-authored papers 5

Chinnappa D Kodira

GE Global Research Center

Co-authored papers 5

Bixiong Chris Shue

Co-authored papers 4

Yong Liang

Michigan State University

Co-authored papers 4

1 - 30

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