Author details

Full Name

Ulf Leser

Affiliation

ORCID

Career Start Year

1998

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36765893	Transcriptomic Deconvolution of Neuroendocrine Neoplasms Predicts Clinically Relevant Characteristics.		2023
37950510	PEDL+: protein-centered relation extraction from PubMed at your fingertip.		2023
37975879	BELB: a biomedical entity linking benchmark.		2023
35227293	DNA methylation reveals distinct cells of origin for pancreatic neuroendocrine carcinomas and pancreatic neuroendocrine tumors.	Genome Med	2022
35758881	RegEl corpus: identifying DNA regulatory elements in the scientific literature.	Database (Oxford)	2022
35671364	Graph Neural Networks for Learning Molecular Excitation Spectra.	Journal of Chemical Theory and Computation	2022
36399413	Chemical-protein relation extraction with ensembles of carefully tuned pretrained language models.	Database : the journal of biological databases and curation	2022
34503273	Elevated Flt3L Predicts Long-Term Survival in Patients with High-Grade Gastroenteropancreatic Neuroendocrine Neoplasms.	Cancers (Basel)	2021
33898938	Annotation and initial evaluation of a large annotated German oncological corpus.	JAMIA Open	2021
32726411	Large-scale entity representation learning for biomedical relationship extraction.		2021
34786019	The Collaborative Research Center FONDA.	Datenbank Spektrum	2021
31243432	HUNER: improving biomedical NER with pretraining.		2020
32657389	PEDL: extracting protein-protein associations using deep language models and distant supervision.		2020
31336942	Discovery and Validation of Novel Biomarkers for Detection of Epithelial Ovarian Cancer.	Cells	2019
32914021	Comparative Analysis of Public Knowledge Bases for Precision Oncology.	JCO Precis Oncol	2019
31419935	VIST - a Variant-Information Search Tool for precision oncology.	BMC Bioinformatics	2019
31270369	Estimation of Transcription Factor Activity in Knockdown Studies.	Scientific Reports	2019
30674903	Robust in-silico identification of Cancer Cell Lines based on RNA and targeted DNA sequencing data.	Scientific Reports	2019
30463544	Variant information systems for precision oncology.	BMC Med Inform Decis Mak	2018
28120820	DNA copy number changes define spatial patterns of heterogeneity in colorectal cancer.	Nat Commun	2017
28347313	Estimating genome-wide regulatory activity from multi-omics data sets using mathematical optimization.	BMC Systems Biology	2017
28415721	Robust in-silico identification of cancer cell lines based on next generation sequencing.	Oncotarget	2017
28881963	Deep learning with word embeddings improves biomedical named entity recognition.		2017
28560858	Basal subtype is predictive for response to cetuximab treatment in patient-derived xenografts of squamous cell head and neck cancer.	International Journal of Cancer	2017
27473063	Comparative assessment of differential network analysis methods.	Briefings in Bioinformatics	2017
27843493	Recognizing chemicals in patents: a comparative analysis.	Journal of Cheminformatics	2016
27187206	SoFIA: a data integration framework for annotating high-throughput datasets.		2016
27420972	Data integration for identification of important transcription factors of STAT6-mediated cell fate decisions.	Genetics and Molecular Research	2016
27045830	Fast Sampling-Based Whole-Genome Haplotype Block Recognition.	IEEE/ACM Trans Comput Biol Bioinform	2016
27443674	Reflection of successful anticancer drug development processes in the literature.	Drug Discovery Today	2016
27256315	SETH detects and normalizes genetic variants in text.		2016
26146838	On-Demand Indexing for Referential Compression of DNA Sequences.	PLoS ONE	2015
25448292	Question answering for biology.	Methods	2015
25401168	Deregulation of the endogenous C/EBPÎ² LIP isoform predisposes to tumorigenesis.	J Mol Med (Berl)	2015
25433699	Computer-assisted curation of a human regulatory core network from the biological literature.		2015
25945798	Assembly of a comprehensive regulatory network for the mammalian circadian clock: a bioinformatics approach.	PLoS ONE	2015
27391904	Algorithms for differential splicing detection using exon arrays: a comparative assessment.	BMC Genomics	2015
26422374	Sequence Factorization with Multiple References.	PLoS ONE	2015
24875049	Ras-mediated deregulation of the circadian clock in cancer.	PLoS Genetics	2014
24304896	CellFinder: a cell data repository.	Nucleic Acids Res	2014
23255168	A survey on annotation tools for the biomedical literature.	Briefings in Bioinformatics	2014
24524158	FRESCO: Referential compression of highly similar sequences.	IEEE/ACM Transactions on Computational Biology and Bioinformatics	2013
22899583	Histone acetylation and DNA demethylation of T cells result in an anaplastic large cell lymphoma-like phenotype.	Haematologica	2013
23865855	CELDA -- an ontology for the comprehensive representation of cells in complex systems.	BMC Bioinformatics	2013
24103098	Using ontologies to study cell transitions.	J Biomed Semantics	2013
24101380	Cross talk between Wnt/Î²-catenin and Irf8 in leukemia progression and drug resistance.	J Exp Med	2013
23599415	Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts.	Database : the journal of biological databases and curation	2013
23323857	A detailed error analysis of 13 kernel methods for protein-protein interaction extraction.	BMC Bioinformatics	2013
21422065	Tools for managing and analyzing microarray data.	Briefings in Bioinformatics	2012
22693219	GeneView: a comprehensive semantic search engine for PubMed.	Nucleic Acids Research	2012