Skip to Main Content

Author Details

Dan Knights
University of Minnesota
2010
130
61
PMIDPaper TitleJournal TitlePublished Year
36747843Human milk variation is shaped by maternal genetics and impacts the infant gut microbiome.bioRxiv2023
37503212Human Cytomegalovirus in breast milk is associated with milk composition, the infant gut microbiome, and infant growth.bioRxiv2023
37169816Shallow shotgun sequencing reduces technical variation in microbiome analysis.Sci Rep2023
36724193Hmong microbiome ANd Gout, Obesity, Vitamin C (HMANGO-C): A phase II clinical study protocol.PLoS One2023
35264213The effects of the Green-Mediterranean diet on cardiometabolic health are linked to gut microbiome modifications: a randomized controlled trial.Genome Med2022
37938255Bacterial communities associated with wood rot fungi that use distinct decomposition mechanisms.ISME Commun2022
35550672Supplementation with a probiotic mixture accelerates gut microbiome maturation and reduces intestinal inflammation in extremely preterm infants.Cell Host Microbe2022
35577971Identification of shared and disease-specific host gene-microbiome associations across human diseases using multi-omic integration.Nat Microbiol2022
35562794Elucidating the role of the gut microbiota in the physiological effects of dietary fiber.Microbiome2022
36466688Bacterial, fungal, and interkingdom microbiome features of exclusively breastfeeding dyads are associated with infant age, antibiotic exposure, and birth mode.Front Microbiol2022
32998876Interaction of bacterial metagenome and virome in patients with cirrhosis and hepatic encephalopathy.Gut2021
33742690Placentas delivered by pre-pregnant obese women have reduced abundance and diversity in the microbiome.FASEB J2021
34789871Reporting guidelines for human microbiome research: the STORMS checklist.Nat Med2021
34245762Multi-Omics Analyses Show Disease, Diet, and Transcriptome Interactions With the Virome.Gastroenterology2021
34259552Saliva Testing Is Accurate for Early-Stage and Presymptomatic COVID-19.Microbiol Spectr2021
33222185Shotgun sequencing of the faecal microbiome to predict response to steroids in patients with lower gastrointestinal acute graft-versus-host disease: An exploratory analysis.Br J Haematol2021
32860791Effects of Diet-Modulated Autologous Fecal Microbiota Transplantation on Weight Regain.Gastroenterology2021
32209720Sex Bias in Gut Microbiome Transmission in Newly Paired Marmosets (Callithrix jacchus).mSystems2020
33499991Wild primate microbiomes prevent weight gain in germ-free mice.Anim Microbiome2020
31679002US Immigration Is Associated With Rapid and Persistent Acquisition of Antibiotic Resistance Genes in the Gut.Clin Infect Dis2020
33196055A Potential Role for Stress-Induced Microbial Alterations in IgA-Associated Irritable Bowel Syndrome with Diarrhea.Cell Rep Med2020
33186523Longitudinal Multi-omics Reveals Subset-Specific Mechanisms Underlying Irritable Bowel Syndrome.Cell2020
33239390Obesity induces gut microbiota alterations and augments acute graft-versus-host disease after allogeneic stem cell transplantation.Sci Transl Med2020
33233349Metagenomic Information Recovery from Human Stool Samples Is Influenced by Sequencing Depth and Profiling Method.Genes (Basel)2020
32916129Longitudinal Multi-omics Reveals Subset-Specific Mechanisms Underlying Irritable Bowel Syndrome.Cell2020
32770859Randomised clinical study: oral aspirin 325 mg daily vs placebo alters gut microbial composition and bacterial taxa associated with colorectal cancer risk.Aliment Pharmacol Ther2020
32680888Upside down solutions: palliative care and COVID-19.BMJ Support Palliat Care2020
32596250A Guide to Diet-Microbiome Study Design.Front Nutr2020
32814582Gut microbiota modulation with long-chain corn bran arabinoxylan in adults with overweight and obesity is linked to an individualized temporal increase in fecal propionate.Microbiome2020
32365167SHOGUN: a modular, accurate and scalable framework for microbiome quantification.Bioinformatics2020
30536921Characterization of Campylobacter jejuni, Campylobacter upsaliensis, and a novel Campylobacter sp. in a captive non-human primate zoological collection.J Med Primatol2019
31792218Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea.Nat Commun2019
31615957Antibiotics and Host-Tailored Probiotics Similarly Modulate Effects on the Developing Avian Microbiome, Mycobiome, and Host Gene Expression.mBio2019
31399723Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.Nat Biotechnol2019
31341288Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.Nat Biotechnol2019
31194939Daily Sampling Reveals Personalized Diet-Microbiome Associations in Humans.Cell Host Microbe2019
31393924Early E. casseliflavus gut colonization and outcomes of allogeneic hematopoietic cell transplantation.PLoS One2019
31043597Small intestinal microbial dysbiosis underlies symptoms associated with functional gastrointestinal disorders.Nat Commun2019
31042284Microbiome Learning Repo (ML Repo): A public repository of microbiome regression and classification tasks.Gigascience2019
30704054The Effects of Glucosamine and Chondroitin Sulfate on Gut Microbial Composition: A Systematic Review of Evidence from Animal and Human Studies.Nutrients2019
30997937Bacterial community structure and function distinguish gut sites in captive red-shanked doucs (Pygathrix nemaeus).Am J Primatol2019
30849075Genetic effects on the commensal microbiota in inflammatory bowel disease patients.PLoS Genet2019
30321331An Increased Abundance of Clostridiaceae Characterizes Arthritis in Inflammatory Bowel Disease and Rheumatoid Arthritis: A Cross-sectional Study.Inflamm Bowel Dis2019
29180726Intergenerational transfer of antibiotic-perturbed microbiota enhances colitis in susceptible mice.Nat Microbiol2018
30081949CLOUD: a non-parametric detection test for microbiome outliers.Microbiome2018
29862519The gut microbiome of nonhuman primates: Lessons in ecology and evolution.Am J Primatol2018
30042392Associations Between Nutrition, Gut Microbiome, and Health in A Novel Nonhuman Primate Model.Sci Rep2018
30039798Antibiotic-induced acceleration of type 1 diabetes alters maturation of innate intestinal immunity.Elife2018
29924794Colorectal cancer mutational profiles correlate with defined microbial communities in the tumor microenvironment.PLoS Genet2018
30223982Essentials of Global Health: a book for students, by students.Lancet Glob Health2018
  • 1 - 50 of 130

Recommended Authors

Center for Microbiome Innovation, University of California San Diego
Career Start Year 2018
Number of shared co-authors 17
Center for Microbiome Innovation, University of California San Diego
Career Start Year 2017
Number of shared co-authors 11
Lawrence Livermore National Laboratory
Career Start Year 2015
Number of shared co-authors 0
University of Michigan ann arbor
Career Start Year 2015
Number of shared co-authors 1
University of Michigan.
Career Start Year 2014
Number of shared co-authors 1
Genentech Inc.
Career Start Year 2014
Number of shared co-authors 0
Statens Serum Institut
Career Start Year 2014
Number of shared co-authors 1
Center for Systems Immunology, Benaroya Research Institute at Virginia Mason
Career Start Year 2014
Number of shared co-authors 2
Perelman School of Medicine, University of Pennsylvania
Career Start Year 2013
Number of shared co-authors 7
Merck & Co., Inc.
Career Start Year 2013
Number of shared co-authors 3
Center for Cancer Research
Career Start Year 2012
Number of shared co-authors 1
Beth Israel Deaconess Medical Center
Career Start Year 2012
Number of shared co-authors 3
Fred Hutchinson Cancer Center
Career Start Year 2011
Number of shared co-authors 5
University of Michigan ann arbor
Career Start Year 2011
Number of shared co-authors 1
Baylor College of Medicine
Career Start Year 2011
Number of shared co-authors 3
University of Michigan ann arbor
Career Start Year 2010
Number of shared co-authors 5
Cedars-Sinai Medical Center, USA F. Widjaja Inflammatory Bowel Disease Institute
Career Start Year 2010
Number of shared co-authors 2
Mayo Clinic
Career Start Year 2009
Number of shared co-authors 16
National Human Genome Research Institute
Career Start Year 2007
Number of shared co-authors 2
Broad Institute
Career Start Year 2007
Number of shared co-authors 11
Drexel University
Career Start Year 2006
Number of shared co-authors 4
Fondazione Edmund Mach
Career Start Year 2006
Number of shared co-authors 10
University of Wisconsin-Madison
Career Start Year 2005
Number of shared co-authors 4
University of California san francisco
Career Start Year 2005
Number of shared co-authors 4
Novartis Institute for Biomedical Research
Career Start Year 2004
Number of shared co-authors 6
University of California san francisco
Career Start Year 2004
Number of shared co-authors 12
Albert Einstein College of Medicine
Career Start Year 2001
Number of shared co-authors 3
University of Central Florida
Career Start Year 1998
Number of shared co-authors 16
University of Idaho
Career Start Year 1996
Number of shared co-authors 1
University of Michigan ann arbor
Career Start Year 1986
Number of shared co-authors 13

Collaborators

University of California
Co-authored papers 41
University of Minnesota
Co-authored papers 18
Broad Institute of MIT and Harvard
Co-authored papers 12
University of California San Diego School of Medicine
Co-authored papers 12
University of California San Diego
Co-authored papers 9
The Ohio State University College of Medicine.
Co-authored papers 8
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 7
Bar-Ilan University
Co-authored papers 7
Broad Institute of MIT and Harvard
Co-authored papers 6
Biodesign Center for Fundamental and Applied Microbiomics, Arizona State University
Co-authored papers 6
University of Minnesota
Co-authored papers 6
Novo Nordisk Foundation Center for Basic Metabolic Research, University of Copenhagen
Co-authored papers 6
Center for Microbiome Innovation, University of California San Diego
Co-authored papers 5
University of Trento
Co-authored papers 5
University of California san francisco
Co-authored papers 4
Co-authored papers 4
Children's Hospital of Philadelphia
Co-authored papers 4
Stanford University
Co-authored papers 4
Mayo Clinic Gastroenterology and Hepatology, Mayo Clinic
Co-authored papers 4
KU Leuven - University of Leuven
Co-authored papers 4
Dalhousie University
Co-authored papers 4
University of Minnesota, Mailman School of Public Health Columbia University
Co-authored papers 3
University of California davis
Co-authored papers 3
Northern Gulf Institute, Mississippi State University
Co-authored papers 3
University of Wurzburg
Co-authored papers 3
University of California San Diego
Co-authored papers 3
Center for Microbiome Innovation, University of California San Diego
Co-authored papers 3
University of Minnesota Genomics Center (UMNGC)
Co-authored papers 3
Weizmann Institute of Science
Co-authored papers 3
Co-authored papers 3