Author details

Full Name

Jennifer J Smith

Affiliation

Institute for Systems Biology

ORCID

Career Start Year

1995

Papers

H Index

Expertise

CM4AI Collaborator

Trey Ideker (CM4AI)

PMID	Paper Title	Journal Title	Published Year
27856698	One-Cell Doubling Evaluation by Living Arrays of Yeast, ODELAY!	G3 (Bethesda)	2017
28594877	An indicator cell assay for blood-based diagnostics.	PLoS One	2017
28854640	Adaptive Prediction Emerges Over Short Evolutionary Time Scales.	Genome Biol Evol	2017
28520713	Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast.	PLoS Comput Biol	2017
25881257	Bicluster Sampled Coherence Metric (BSCM) provides an accurate environmental context for phenotype predictions.	BMC Syst Biol	2015
24185701	Molecular mechanisms of system responses to novel stimuli are predictable from public data.	Nucleic Acids Res	2014
23349476	Global analysis of condition-specific subcellular protein distribution and abundance.	Mol Cell Proteomics	2013
24263361	Peroxisomes take shape.	Nat Rev Mol Cell Biol	2013
21206489	Environment-responsive transcription factors bind subtelomeric elements and regulate gene silencing.	Mol Syst Biol	2011
21877289	Statistical analysis of dynamic transcriptional regulatory network structure.	Methods Mol Biol	2011
20008511	Histone chaperone Chz1p regulates H2B ubiquitination and subtelomeric anti-silencing.	Nucleic Acids Res	2010
19273605	Role of the histone variant H2A.Z/Htz1p in TBP recruitment, chromatin dynamics, and regulated expression of oleate-responsive genes.	Mol Cell Biol	2009
19597788	Cytoscape: a community-based framework for network modeling.	Methods Mol Biol	2009
19188056	Regulation of peroxisome dynamics.	Curr Opin Cell Biol	2009
18426976	Genome-wide analysis of signaling networks regulating fatty acid-induced gene expression and organelle biogenesis.	J Cell Biol	2008
18621837	Control of transcriptional variability by overlapping feed-forward regulatory motifs.	Biophys J	2008
17551510	Transcriptional responses to fatty acid are coordinated by combinatorial control.	Mol Syst Biol	2007
16936734	Dual feedback loops in the GAL regulon suppress cellular heterogeneity in yeast.	Nat Genet	2006
17050007	Proteomics of the peroxisome.	Biochim Biophys Acta	2006
16738555	Expression and functional profiling reveal distinct gene classes involved in fatty acid metabolism.	Mol Syst Biol	2006
16365162	The mobile nucleoporin Nup2p and chromatin-bound Prp20p function in endogenous NPC-mediated transcriptional control.	J Cell Biol	2005
16301537	A data integration methodology for systems biology.	Proc Natl Acad Sci U S A	2005
16301536	A data integration methodology for systems biology: experimental verification.	Proc Natl Acad Sci U S A	2005
15596542	Quantitative mass spectrometry reveals a role for the GTPase Rho1p in actin organization on the peroxisome membrane.	J Cell Biol	2004
14517321	Pex11-related proteins in peroxisome dynamics: a role for the novel peroxin Pex27p in controlling peroxisome size and number in Saccharomyces cerevisiae.	Mol Biol Cell	2003
12135984	Transcriptome profiling to identify genes involved in peroxisome assembly and function.	J Cell Biol	2002
11042200	A role for the peroxin Pex8p in Pex20p-dependent thiolase import into peroxisomes of the yeast Yarrowia lipolytica.	J Biol Chem	2001
10787422	Regulation of peroxisome size and number by fatty acid beta -oxidation in the yeast yarrowia lipolytica.	J Biol Chem	2000
11330048	Peroxisome biogenesis in the yeast Yarrowia lipolytica.	Cell Biochem Biophys	2000
9679140	Pex20p of the yeast Yarrowia lipolytica is required for the oligomerization of thiolase in the cytosol and for its targeting to the peroxisome.	J Cell Biol	1998
9094438	Identification and localization of the sod2 gene product in fission yeast.	FEBS Lett	1997
9111320	The peroxin Pex17p of the yeast Yarrowia lipolytica is associated peripherally with the peroxisomal membrane and is required for the import of a subset of matrix proteins.	Mol Cell Biol	1997
8702763	The Yarrowia lipolytica gene PAY5 encodes a peroxisomal integral membrane protein homologous to the mammalian peroxisome assembly factor PAF-1.	J Biol Chem	1996
7628714	The PAH2 gene is required for peroxisome assembly in the methylotrophic yeast Hansenula polymorpha and encodes a member of the tetratricopeptide repeat family of proteins.	Gene	1995

1 - 34 of 34

Florian Fr??hlich

Osnabruck University Department of Biology/Chemistry Bioanalytical Chemistry section

Career Start Year 2007

Number of shared co-authors 0

Mohan Babu

University of Regina

Career Start Year 2004

Number of shared co-authors 1

Jingjing Liu

College of Tropical Crops, Hainan University

Career Start Year 2003

Number of shared co-authors 1

Maya Schuldiner

The Weizmann Institute of Science

Career Start Year 2000

Number of shared co-authors 1

Michael Davey

BC Children's Hospital Research Institute, University of British Columbia

Career Start Year 2000

Number of shared co-authors 1

Gordon Chua

University of Calgary

Career Start Year 2000

Number of shared co-authors 0

Yunchen Gong

University of Toronto

Career Start Year 2000

Number of shared co-authors 0

Anthony G Beckhouse

Bio-Rad Laboratories Pty Ltd

Career Start Year 2000

Number of shared co-authors 0

Gerard Cagney

Conway Institute of Biomedical and Biomolecular Sciences, University College Dublin

Career Start Year 2000

Number of shared co-authors 1

Amy Hin Yan Tong

University of Toronto

Career Start Year 1999

Number of shared co-authors 2

Tobias C Walther

Harvard T. H. Chan School of Public Health

Career Start Year 1999

Number of shared co-authors 0

Pablo S Aguilar

Instituto de Fisiologia

Career Start Year 1998

Number of shared co-authors 0

Jean-Claude Farr??

University of California

Career Start Year 1998

Number of shared co-authors 1

Alexander DeLuna

Centro de Investigacion y de Estudios Avanzados del Instituto Politecnico Nacional

Career Start Year 1997

Number of shared co-authors 0

Patrice Menard

Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark

Career Start Year 1996

Number of shared co-authors 0

Christopher T Workman

Technical University of Denmark

Career Start Year 1995

Number of shared co-authors 5

Audrey P Gasch

University of Wisconsin-Madison

Career Start Year 1994

Number of shared co-authors 0

Kristin Baetz

Ottawa Institute of Systems Biology, University of Ottawa, University of Calgary

Career Start Year 1994

Number of shared co-authors 0

Edward M Marcotte

University of Texas

Career Start Year 1993

Number of shared co-authors 5

J??rg B??hler

University College London

Career Start Year 1991

Number of shared co-authors 1

Andreas Beyer

University of Cologne

Career Start Year 1991

Number of shared co-authors 2

Erin K O'Shea

Howard Hughes Medical Institute

Career Start Year 1989

Number of shared co-authors 0

Christopher J Roberts

School of Pharmacy, University of Nottingham

Career Start Year 1989

Number of shared co-authors 0

Stanley Fields

University of Washington

Career Start Year 1985

Number of shared co-authors 1

Brenda J Andrews

University of Toronto

Career Start Year 1983

Number of shared co-authors 2

Michael Snyder

Stanford University

Career Start Year 1981

Number of shared co-authors 7

Charles Boone

University of Toronto

Career Start Year 1979

Number of shared co-authors 5

Pamela A Silver

Harvard Medical School

Career Start Year 1979

Number of shared co-authors 0

Stephen G Oliver

University of Cambridge

Career Start Year 1976

Number of shared co-authors 3

Suresh Subramani

University of California San Diego

Career Start Year 1975

Number of shared co-authors 2

row(s) 1 - 30 of 30

John D Aitchison

Center for Global Infectious Disease Research, Seattle Children's Research Institute

Co-authored papers 25

Richard A Rachubinski

University of Alberta

Co-authored papers 13

Marcello Marelli

AstraZeneca Oncology R&D

Co-authored papers 7

Stephen A Ramsey

Oregon State University

Co-authored papers 5

Daehee Hwang

Co-authored papers 4

Nitin S Baliga

Institute for Systems Biology

Co-authored papers 4

David J Dilworth

Institute for Systems Biology

Co-authored papers 4

Jung-Hsien Chiang

National Cheng Kung University

Co-authored papers 3

Rowan H Christmas

Co-authored papers 3

Andrew F Siegel

University of Washington

Co-authored papers 3

Fred D Mast

Center for Global Infectious Disease Research, Seattle Children's Research Institute

Co-authored papers 3

Thurston Herricks

Center for Global Infectious Disease Research, Seattle Children's Research Institute

Co-authored papers 2

Leroy Hood

Center for Phenomic Health, The Buck Institute for Research on Aging

Co-authored papers 2

David R Goodlett

University of Victoria

Co-authored papers 2

Franco J Vizeacoumar

College of Medicine, University of Saskatchewan

Co-authored papers 2

Gregory W Carter

Tufts University School of Medicine

Co-authored papers 1

Ruedi Aebersold

Institute of Molecular Systems Biology, ETH Zurich

Co-authored papers 1

Richard Kreisberg

Co-authored papers 1

Nathan D Price

Institute for Systems Biology

Co-authored papers 1

Brian T Chait

The Rockefeller University

Co-authored papers 1

Krassen Dimitrov

Baylor College of Medicine

Co-authored papers 1

Richard W Wozniak

University of Alberta

Co-authored papers 1

Sarah Killcoyne

Cyted Ltd

Co-authored papers 1

Bruz Marzolf

Co-authored papers 1

Christopher L Plaisier

Arizona State University

Co-authored papers 1

Timothy Galitski

Institute for Systems Biology

Co-authored papers 1

Robert Lipshutz

Co-authored papers 1

Benjamin D Heavner

University of Washington

Co-authored papers 1

Trey Ideker (CM4AI)

University of California San Diego

Co-authored papers 1

Christopher M Dobson

University of Cambridge

Co-authored papers 1

1 - 30

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