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Author Details

Justin Y Newberg
Foundation Medicine Inc.
2008
49
20
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37558578Erratum to "Aligning tumor mutational burden (TMB) quantification across diagnostic platforms: phase II of the Friends of Cancer Research TMB Harmonization Project": [Annals of Oncology 32 (2021) 1626-1636].Ann Oncol2024
34995376TNF receptor-related factor 3 inactivation promotes the development of intrahepatic cholangiocarcinoma through NF-κB-inducing kinase-mediated hepatocyte transdifferentiation.Hepatology2023
38001126Source, co-occurrence, and prognostic value of PTEN mutations or loss in colorectal cancer.NPJ Genom Med2023
37890492Tumor sequencing of African ancestry reveals differences in clinically relevant alterations across common cancers.Cancer Cell2023
37769224Pan-Cancer Analysis of Copy-Number Features Identifies Recurrent Signatures and a Homologous Recombination Deficiency Biomarker to Predict Poly (ADP-Ribose) Polymerase Inhibitor Response.JCO Precis Oncol2023
37354528A Novel HRD Signature Is Predictive of FOLFIRINOX Benefit in Metastatic Pancreatic Cancer.Oncologist2023
37236698Comprehensive genomic profiling and treatment patterns across ancestries in advanced prostate cancer: a large-scale retrospective analysis.Lancet Digit Health2023
35338148Comprehensive characterization of PTEN mutational profile in a series of 34,129 colorectal cancers.Nat Commun2022
36446041Comparison of PIK3CA Mutation Prevalence in Breast Cancer Across Predicted Ancestry Populations.JCO Precis Oncol2022
36112789Transposon Mutagenesis Reveals RBMS3 Silencing as a Promoter of Malignant Progression of BRAFV600E-Driven Lung Tumorigenesis.Cancer Res2022
35176763The Genomics of Colorectal Cancer in Populations with African and European Ancestry.Cancer Discov2022
32553564Noninvasive Assessment of Epidermal Genomic Markers of UV Exposure in Skin.J Invest Dermatol2021
33866194The spectrum of tumors harboring BAP1 gene alterations.Cancer Genet2021
34606929Aligning tumor mutational burden (TMB) quantification across diagnostic platforms: phase II of the Friends of Cancer Research TMB Harmonization Project.Ann Oncol2021
34398873Transposon mutagenesis identifies cooperating genetic drivers during keratinocyte transformation and cutaneous squamous cell carcinoma progression.PLoS Genet2021
34535754Author Correction: Genomic context of NTRK1/2/3 fusion-positive tumours from a large real-world population.NPJ Precis Oncol2021
34475109Sleeping Beauty Transposon Mutagenesis Identifies Genes Driving the Initiation and Metastasis of Uterine Leiomyosarcoma.Cancer Res2021
33970261Prevalence of High-Risk Nonvaccine Human Papillomavirus Types in Advanced Squamous Cell Carcinoma Among Individuals of African vs Non-African Ancestry.JAMA Netw Open2021
34285332Genomic context of NTRK1/2/3 fusion-positive tumours from a large real-world population.NPJ Precis Oncol2021
33435458Promoterless Transposon Mutagenesis Drives Solid Cancers via Tumor Suppressor Inactivation.Cancers (Basel)2021
32651179Genomic Profiling of Prostate Cancers from Men with African and European Ancestry.Clin Cancer Res2020
31427573Comprehensive characterization of RAS mutations in colon and rectal cancers in old and young patients.Nat Commun2019
35100713High-Grade Salivary Gland Ductal Carcinoma With Unusual <i>EGFR</i> Amplification Responsive to Afatinib.JCO Precis Oncol2019
31434613PARP-1 activity (PAR) determines the sensitivity of cervical cancer to olaparib.Gynecol Oncol2019
29059366SBCDDB: Sleeping Beauty Cancer Driver Database for gene discovery in mouse models of human cancers.Nucleic Acids Res2018
29846651SB Driver Analysis: a Sleeping Beauty cancer driver analysis framework for identifying and prioritizing experimentally actionable oncogenes and tumor suppressors.Nucleic Acids Res2018
30327349Molecular profiling of nonalcoholic fatty liver disease-associated hepatocellular carcinoma using SB transposon mutagenesis.Proc Natl Acad Sci U S A2018
28724549Identification of New Tumor Suppressor Genes in Triple-Negative Breast Cancer.Cancer Res2017
28811376In vivo loss-of-function screens identify KPNB1 as a new druggable oncogene in epithelial ovarian cancer.Proc Natl Acad Sci U S A2017
26918604High throughput microscopy identifies bisphenol AP, a bisphenol A analog, as a novel AR down-regulator.Oncotarget2016
27849608Transposon mutagenesis identifies genes that cooperate with mutant Pten in breast cancer progression.Proc Natl Acad Sci U S A2016
27178121Two-Step Forward Genetic Screen in Mice Identifies Ral GTPase-Activating Proteins as Suppressors of Hepatocellular Carcinoma.Gastroenterology2016
27479497Analyzing tumor heterogeneity and driver genes in single myeloid leukemia cells with SBCapSeq.Nat Biotechnol2016
27247392Transposon mutagenesis identifies genes and cellular processes driving epithelial-mesenchymal transition in hepatocellular carcinoma.Proc Natl Acad Sci U S A2016
25439843Genomic and genetic variation in E2F transcription factor-1 in men with nonobstructive azoospermia.Fertil Steril2015
25848750Transposon mutagenesis identifies genetic drivers of Braf(V600E) melanoma.Nat Genet2015
25489103Automated analysis of immunohistochemistry images identifies candidate location biomarkers for cancers.Proc Natl Acad Sci U S A2014
23444138Coactivators enable glucocorticoid receptor recruitment to fine-tune estrogen receptor transcriptional responses.Nucleic Acids Res2013
22084958A framework for image-based classification of mitotic cells in asynchronous populations.Assay Drug Dev Technol2012
23226299Automated analysis and reannotation of subcellular locations in confocal images from the Human Protein Atlas.PLoS One2012
22999881Feed-forward inhibition of androgen receptor activity by glucocorticoid action in human adipocytes.Chem Biol2012
21256200High content imaging-based assay to classify estrogen receptor-α ligands based on defined mechanistic outcomes.Gene2011
22355445High throughput method to quantify anterior-posterior polarity of T-cells and epithelial cells.Viruses2011
21796534Automated microscopy and image analysis for androgen receptor function.Methods Mol Biol2011
19307607Detection of protein-protein interactions through vesicle targeting.Genetics2009
20628548Automated Analysis of Human Protein Atlas Immunofluorescence Images.Proc IEEE Int Symp Biomed Imaging2009
19399439Location proteomics: systematic determination of protein subcellular location.Methods Mol Biol2009
18435555A framework for the automated analysis of subcellular patterns in human protein atlas images.J Proteome Res2008
20628549AUTOMATED COMPARISON OF PROTEIN SUBCELLULAR LOCATION PATTERNS BETWEEN IMAGES OF NORMAL AND CANCEROUS TISSUES.Proc IEEE Int Symp Biomed Imaging2008
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Collaborators

Robert F Murphy
Carnegie Mellon University
Co-authored papers 7
Kosuke Yoshihara
Co-authored papers 4
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Co-authored papers 3
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Co-authored papers 2
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Co-authored papers 2
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Co-authored papers 2
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Stanford University
Co-authored papers 2
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Co-authored papers 2
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Co-authored papers 2
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University of Michigan-Ann Arbor
Co-authored papers 2
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Co-authored papers 2
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KTH Royal Institute of Technology
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Joshua D Campbell
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William A Weiss
University of California san francisco
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Carmen R Isasi
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Samir M Hanash
University of Texas MD Anderson Cancer Center
Co-authored papers 1
Julia F Hopkins
Foundation Medicine Inc.
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Scott A Ochsner
Co-authored papers 1
Randy Vince
University Hospitals Seidman Cancer Center, Case Western Reserve University
Co-authored papers 1
Jianjun Shen
The University of Texas MD Anderson Cancer Center
Co-authored papers 1
Neil J McKenna
Baylor College of Medicine
Co-authored papers 1
Nikolaus Schultz
Memorial Sloan Kettering Cancer Center
Co-authored papers 1
David J Adams
Wellcome Sanger Institute
Co-authored papers 1
Release 1.2