|
| 36701288 | A dual graph neural network for drug-drug interactions prediction based on molecular structure and interactions. | PLoS Comput Biol | 2023 |
| 38055721 | RMDGCN: Prediction of RNA methylation and disease associations based on graph convolutional network with attention mechanism. | PLoS Comput Biol | 2023 |
| 37018561 | Biomarker Identification via a Factorization Machine-Based Neural Network With Binary Pairwise Encoding. | IEEE/ACM Trans Comput Biol Bioinform | 2023 |
| 37027603 | Microbe-Disease Association Prediction Using RGCN Through Microbe-Drug-Disease Network. | IEEE/ACM Trans Comput Biol Bioinform | 2023 |
| 36623439 | The prediction of molecular toxicity based on BiGRU and GraphSAGE. | Comput Biol Med | 2023 |
| 36646843 | MSResG: Using GAE and Residual GCN to Predict Drug-Drug Interactions Based on Multi-source Drug Features. | Interdiscip Sci | 2023 |
| 32845842 | Identifying Gene Signatures for Cancer Drug Repositioning Based on Sample Clustering. | IEEE/ACM Trans Comput Biol Bioinform | 2022 |
| 35620297 | Drug Repositioning with GraphSAGE and Clustering Constraints Based on Drug and Disease Networks. | Front Pharmacol | 2022 |
| 35810958 | A web server for identifying circRNA-RBP variable-length binding sites based on stacked generalization ensemble deep learning network. | Methods | 2022 |
| 35711758 | Metapath Aggregated Graph Neural Network and Tripartite Heterogeneous Networks for Microbe-Disease Prediction. | Front Microbiol | 2022 |
| 36618933 | Drug repositioning based on heterogeneous networks and variational graph autoencoders. | Front Pharmacol | 2022 |
| 36113743 | A pseudo-Siamese framework for circRNA-RBP binding sites prediction integrating BiLSTM and soft attention mechanism. | Methods | 2022 |
| 33705323 | Inferring Metabolite-Disease Association Using Graph Convolutional Networks. | IEEE/ACM Trans Comput Biol Bioinform | 2022 |
| 34856391 | CircR2Disease v2.0: An Updated Web Server for Experimentally Validated circRNA-disease Associations and Its Application. | Genomics Proteomics Bioinformatics | 2022 |
| 35063917 | Human drug-pathway association prediction based on network consistency projection. | Comput Biol Chem | 2022 |
| 34864856 | Predicting drug-drug interactions by graph convolutional network with multi-kernel. | Brief Bioinform | 2022 |
| 35323901 | MLRDFM: a multi-view Laplacian regularized DeepFM model for predicting miRNA-disease associations. | Brief Bioinform | 2022 |
| 34748953 | Predicting CircRNA disease associations using novel node classification and link prediction models on Graph Convolutional Networks. | Methods | 2022 |
| 34014827 | Predicting Microbe-Disease Association Based on Multiple Similarities and LINE Algorithm. | IEEE/ACM Trans Comput Biol Bioinform | 2022 |
| 34245870 | WHISTLE server: A high-accuracy genomic coordinate-based machine learning platform for RNA modification prediction. | Methods | 2022 |
| 34346083 | Association predictions of genomics, proteinomics, transcriptomics, microbiome, metabolomics, pathomics, radiomics, drug, symptoms, environment factor, and disease networks: A comprehensive approach. | Med Res Rev | 2022 |
| 34111017 | Predicting miRNA-Disease Associations Based On Multi-View Variational Graph Auto-Encoder With Matrix Factorization. | IEEE J Biomed Health Inform | 2022 |
| 32798654 | Variational graph auto-encoders for miRNA-disease association prediction. | Methods | 2021 |
| 33927752 | Predicting Metabolite-Disease Associations Based on LightGBM Model. | Front Genet | 2021 |
| 33554238 | Machine learning approaches for predicting biomolecule-disease associations. | Brief Funct Genomics | 2021 |
| 34665747 | Human Protein Complex-Based Drug Signatures for Personalized Cancer Medicine. | IEEE J Biomed Health Inform | 2021 |
| 34481236 | An unsupervised method for histological image segmentation based on tissue cluster level graph cut. | Comput Med Imaging Graph | 2021 |
| 34415289 | Prediction of RBP binding sites on circRNAs using an LSTM-based deep sequence learning architecture. | Brief Bioinform | 2021 |
| 34070678 | GATCDA: Predicting circRNA-Disease Associations Based on Graph Attention Network. | Cancers (Basel) | 2021 |
| 33341893 | A comprehensive survey on computational methods of non-coding RNA and disease association prediction. | Brief Bioinform | 2021 |
| 33413092 | Identifying the sequence specificities of circRNA-binding proteins based on a capsule network architecture. | BMC Bioinformatics | 2021 |
| 30381060 | A Review of Drug Repositioning Based Chemical-induced Cell Line Expression Data. | Curr Med Chem | 2020 |
| 32029856 | Integrating random walk with restart and k-Nearest Neighbor to identify novel circRNA-disease association. | Sci Rep | 2020 |
| 33344506 | Predicting Metabolite-Disease Associations Based on Spy Strategy and ABC Algorithm. | Front Mol Biosci | 2020 |
| 33193615 | Prioritizing CircRNA-Disease Associations With Convolutional Neural Network Based on Multiple Similarity Feature Fusion. | Front Genet | 2020 |
| 32655300 | WITMSG: Large-scale Prediction of Human Intronic m<sup>6</sup>A RNA Methylation Sites from Sequence and Genomic Features. | Curr Genomics | 2020 |
| 32670500 | Bioinformatics approaches for deciphering the epitranscriptome: Recent progress and emerging topics. | Comput Struct Biotechnol J | 2020 |
| 32582286 | LITHOPHONE: Improving lncRNA Methylation Site Prediction Using an Ensemble Predictor. | Front Genet | 2020 |
| 32446243 | Predicting novel CircRNA-disease associations based on random walk and logistic regression model. | Comput Biol Chem | 2020 |
| 32503474 | Matrix factorization with neural network for predicting circRNA-RBP interactions. | BMC Bioinformatics | 2020 |
| 32523330 | Deep belief network-Based Matrix Factorization Model for MicroRNA-Disease Associations Prediction. | Evol Bioinform Online | 2020 |
| 32351464 | Predicting Microbe-Disease Association by Learning Graph Representations and Rule-Based Inference on the Heterogeneous Network. | Front Microbiol | 2020 |
| 30113899 | Artificial Fish Swarm Optimization Based Method to Identify Essential Proteins. | IEEE/ACM Trans Comput Biol Bioinform | 2020 |
| 30403637 | Introducing Heuristic Information Into Ant Colony Optimization Algorithm for Identifying Epistasis. | IEEE/ACM Trans Comput Biol Bioinform | 2020 |
| 30761181 | deepDriver: Predicting Cancer Driver Genes Based on Somatic Mutations Using Deep Convolutional Neural Networks. | Front Genet | 2019 |
| 31703384 | Identifying Cancer-Specific circRNA-RBP Binding Sites Based on Deep Learning. | Molecules | 2019 |
| 31673292 | Predicting metabolite-disease associations based on KATZ model. | BioData Min | 2019 |
| 31874605 | Detecting overlapping protein complexes in weighted PPI network based on overlay network chain in quotient space. | BMC Bioinformatics | 2019 |
| 31730648 | Prediction of disease-related metabolites using bi-random walks. | PLoS One | 2019 |
| 31853227 | GBDTCDA: Predicting circRNA-disease Associations Based on Gradient Boosting Decision Tree with Multiple Biological Data Fusion. | Int J Biol Sci | 2019 |