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Author Details

Teunis J P van Dam
Utrecht University
2008
26
20
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
35421089Phylogenetic profiling in eukaryotes: The effect of species, orthologous group, and interactome selection on protein interaction prediction.PLoS One2022
32935832Benchmarking orthology methods using phylogenetic patterns defined at the base of Eukaryotes.Brief Bioinform2021
34417257Hobit identifies tissue-resident memory T cell precursors that are regulated by Eomes.Sci Immunol2021
32275929TMEM70 functions in the assembly of complexes I and V.Biochim Biophys Acta Bioenerg2020
31740506Ciliary force-responsive striated fibers promote basal body connections and cortical interactions.J Cell Biol2020
32661361Tissue-resident memory CD8<sup>+</sup> T cells shape local and systemic secondary T cell responses.Nat Immunol2020
31026339Inferring the Evolutionary History of Your Favorite Protein: A Guide for Molecular Biologists.Bioessays2019
31461468Measuring the impact of gene prediction on gene loss estimates in Eukaryotes by quantifying falsely inferred absences.PLoS Comput Biol2019
31095607CiliaCarta: An integrated and validated compendium of ciliary genes.PLoS One2019
28715978The Role of Efflux Pumps in Tuberculosis Treatment and Their Promise as a Target in Drug Development: Unraveling the Black Box.Annu Rev Pharmacol Toxicol2018
29323249Probabilistic data integration identifies reliable gametocyte-specific proteins and transcripts in malaria parasites.Sci Rep2018
28534087Interspecies differences in PTH-mediated PKA phosphorylation of the epithelial calcium channel TRPV5.Pflugers Arch2017
29177046The Gene Ontology of eukaryotic cilia and flagella.Cilia2017
28977405Genome-scale detection of positive selection in nine primates predicts human-virus evolutionary conflicts.Nucleic Acids Res2017
27173435An organelle-specific protein landscape identifies novel diseases and molecular mechanisms.Nat Commun2016
26595381TMEM107 recruits ciliopathy proteins to subdomains of the ciliary transition zone and causes Joubert syndrome.Nat Cell Biol2016
26643951OFIP/KIAA0753 forms a complex with OFD1 and FOR20 at pericentriolar satellites and centrosomes and is mutated in one individual with oral-facial-digital syndrome.Hum Mol Genet2016
26167768An siRNA-based functional genomics screen for the identification of regulators of ciliogenesis and ciliopathy genes.Nat Cell Biol2015
26714646KIAA0556 is a novel ciliary basal body component mutated in Joubert syndrome.Genome Biol2015
23569277Evolution of modular intraflagellar transport from a coatomer-like progenitor.Proc Natl Acad Sci U S A2013
23725226The SYSCILIA gold standard (SCGSv1) of known ciliary components and its applications within a systems biology consortium.Cilia2013
22698286The vertebrate mitotic checkpoint protein BUBR1 is an unusual pseudokinase.Dev Cell2012
21686276Evolution of the Ras-like small GTPases and their regulators.Small GTPases2011
22057117Evolution of the TOR pathway.J Mol Evol2011
19567266Phylogeny of the CDC25 homology domain reveals rapid differentiation of Ras pathways between early animals and fungi.Cell Signal2009
18711636Protein complex evolution does not involve extensive network rewiring.PLoS Comput Biol2008
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Collaborators

Martijn A Huynen
Radboud University Medical Centre Nijmegen
Co-authored papers 13
Berend Snel
Utrecht University
Co-authored papers 9
Rachel H Giles
University Medical Center Utrecht
Co-authored papers 5
Philip L Beales
UCL Great Ormond Street Institute of Child Health, University College London
Co-authored papers 3
Robert B Russell
Heidelberg University
Co-authored papers 3
Colin A Johnson
University of Leeds Leeds Institute of Medical Research at St James's
Co-authored papers 3
Heymut Omran
University Hospital Muenster
Co-authored papers 3
Fowzan S Alkuraya
King Faisal Specialist Hospital and Research Center
Co-authored papers 2
Gerard W Dougherty
University Hospital Muenster
Co-authored papers 2
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 1
Joseph G Gleeson
University of California
Co-authored papers 1
Susanne Roosing
Radboud University Medical Center
Co-authored papers 1
Nicholas Katsanis
Northwestern University
Co-authored papers 1
Lijia Huang
Children's Hospital of Eastern Ontario (CHEO)
Co-authored papers 1
Clare V Logan
Co-authored papers 1
Martin McKibbin
Leeds Teaching Hospitals NHS Trust
Co-authored papers 1
David A D Parry
Co-authored papers 1
Carole Ober
University of Chicago
Co-authored papers 1
Kym M Boycott
Children's Hospital of Eastern Ontario
Co-authored papers 1
Karen R Christie
Stanford University Medical School
Co-authored papers 1
Daniel Birnbaum
Co-authored papers 1
Martin Turk
Max Planck Institute of Biochemistry
Co-authored papers 1
Fiona Stewart
Belfast City Hospital
Co-authored papers 1
Chandree L Beaulieu
Children's Hospital of Eastern Ontario Research Institute, University of Ottawa
Co-authored papers 1
Andrew R Webster
Institute of Ophthalmology, University College London
Co-authored papers 1
Rachael P Huntley
Institute of Cardiovascular Science, University College London
Co-authored papers 1
Avner Schlessinger
Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai
Co-authored papers 1
Matthew J Townsend
Co-authored papers 1
Jay Shendure
University of Washington
Co-authored papers 1
Paola Roncaglia
European Bioinformatics Institute (EMBL-EBI)
Co-authored papers 1
Release 1.2