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Author Details

Andras Fiser
Albert Einstein College of Medicine
1968
148
44
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36747792Assessing the functional impact of protein binding site definition.bioRxiv2023
37790377Glutamylation of Npm2 and Nap1 acidic disordered regions increases DNA charge mimicry to enhance chaperone efficiency.bioRxiv2023
37603727Optimal selection of suitable templates in protein interface prediction.Bioinformatics2023
37345431Identification and functional validation of an enhancer variant in the 9p21.3 locus associated with glaucoma risk and elevated expression of p16<sup>INK4a</sup>.Aging Cell2023
37101376Chi3l1 Is a Modulator of Glioma Stem Cell States and a Therapeutic Target in Glioblastoma.Cancer Res2023
37292862Identification and functional validation of an enhancer variant in the 9p21.3 locus associated with glaucoma risk and elevated expression of <i>p16 <sup>INK4a</sup></i>.bioRxiv2023
36920074MAT Gain of Activity Mutation in <i>Helicobacter pylori</i> Is Associated with Resistance to MTAN Transition State Analogues.ACS Infect Dis2023
34499117INTERCAAT: identifying interface residues between macromolecules.Bioinformatics2022
35817658Cell fate decisions, transcription factors and signaling during early retinal development.Prog Retin Eye Res2022
35523180Subventricular zone adult mouse neural stem cells require insulin receptor for self-renewal.Stem Cell Reports2022
35879651Integrated structure-based protein interface prediction.BMC Bioinformatics2022
34917954Allosteric regulation of binding specificity of HVEM for CD160 and BTLA ligands upon G89F mutation.Curr Res Struct Biol2021
33684100miRNA-mediated loss of m6A increases nascent translation in glioblastoma.PLoS Genet2021
33486430Residue-based pharmacophore approaches to study protein-protein interactions.Curr Opin Struct Biol2021
33483991Estimating the accuracy of pharmacophore-based detection of cognate receptor-ligand pairs in the immunoglobulin superfamily.Proteins2021
31298437Discovery of receptor-ligand interfaces in the immunoglobulin superfamily.Proteins2020
31977133Assessment of chemical-crosslink-assisted protein structure modeling in CASP13.Proteins2020
33027689A Designer Quest for the Achilles' Heel of Influenza.Structure2020
32795404Redesigning HVEM Interface for Selective Binding to LIGHT, BTLA, and CD160.Structure2020
32893190A proton-coupled folate transporter mutation causing hereditary folate malabsorption locks the protein in an inward-open conformation.J Biol Chem2020
30615604Protein-protein binding supersites.PLoS Comput Biol2019
29947739The choice of sequence homologs included in multiple sequence alignments has a dramatic impact on evolutionary conservation analysis.Bioinformatics2019
31587357Assessing the accuracy of contact predictions in CASP13.Proteins2019
31569265Assessment of chemical-crosslink-assisted protein structure modeling in CASP13.Proteins2019
30858177Substitutions that lock and unlock the proton-coupled folate transporter (PCFT-SLC46A1) in an inward-open conformation.J Biol Chem2019
31172941CCL2 mobilizes ALIX to facilitate Gag-p6 mediated HIV-1 virion release.Elife2019
30930066Computational Redesign of PD-1 Interface for PD-L1 Ligand Selectivity.Structure2019
30353164Regulation of human glioma cell migration, tumor growth, and stemness gene expression using a Lck targeted inhibitor.Oncogene2019
29211823Identifying functionally informative evolutionary sequence profiles.Bioinformatics2018
29440412Genetic resistance to purine nucleoside phosphorylase inhibition in <i>Plasmodium falciparum</i>.Proc Natl Acad Sci U S A2018
29344585Hereditary folate malabsorption due to a mutation in the external gate of the proton-coupled folate transporter SLC46A1.Blood Adv2018
29167151Substituted-cysteine accessibility and cross-linking identify an exofacial cleft in the 7th and 8th helices of the proton-coupled folate transporter (SLC46A1).Am J Physiol Cell Physiol2018
28640909HIV-Tat regulates macrophage gene expression in the context of neuroAIDS.PLoS One2017
28802835Residues in the eighth transmembrane domain of the proton-coupled folate transporter (SLC46A1) play an important role in defining the aqueous translocation pathway and in folate substrate binding.Biochim Biophys Acta Biomembr2017
26884338Identification of an Extracellular Gate for the Proton-coupled Folate Transporter (PCFT-SLC46A1) by Cysteine Cross-linking.J Biol Chem2016
27671894Development of a motif-based topology-independent structure comparison method to identify evolutionarily related folds.Proteins2016
27889206ProtLID, a Residue-Based Pharmacophore Approach to Identify Cognate Protein Ligands in the Immunoglobulin Superfamily.Structure2016
27828948Control of mitochondrial function and cell growth by the atypical cadherin Fat1.Nature2016
276514862-(m-Azidobenzoyl)taxol binds differentially to distinct β-tubulin isotypes.Proc Natl Acad Sci U S A2016
27251438Role of the tryptophan residues in proton-coupled folate transporter (PCFT-SLC46A1) function.Am J Physiol Cell Physiol2016
27017927Nuc-ErbB3 regulates H3K27me3 levels and HMT activity to establish epigenetic repression during peripheral myelination.Glia2016
25608532Identification of Tyr residues that enhance folate substrate binding and constrain oscillation of the proton-coupled folate transporter (PCFT-SLC46A1).Am J Physiol Cell Physiol2015
26252221Modularity of Protein Folds as a Tool for Template-Free Modeling of Structures.PLoS Comput Biol2015
25716997Buprenorphine decreases the CCL2-mediated chemotactic response of monocytes.J Immunol2015
25549724Expression, Clinical Significance, and Receptor Identification of the Newest B7 Family Member HHLA2 Protein.Clin Cancer Res2015
24246499Functional clustering of immunoglobulin superfamily proteins with protein-protein interaction information calibrated hidden Markov model sequence profiles.J Mol Biol2014
25428367Prediction of DNA binding motifs from 3D models of transcription factors; identifying TLX3 regulated genes.Nucleic Acids Res2014
24918043A word of caution about biological inference - Revisiting cysteine covalent state predictions.FEBS Open Bio2014
24567391Trends in structural coverage of the protein universe and the impact of the Protein Structure Initiative.Proc Natl Acad Sci U S A2014
24623969Gene regulation by PAX6: structural-functional correlations of missense mutants and transcriptional control of Trpm3/miR-204.Mol Vis2014
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Collaborators

Jorge Eduardo Fajardo
Albert Einstein College of Medicine
Co-authored papers 27
Andrej Sali (CM4AI)
University of California San Francisco
Co-authored papers 21
Steven C Almo
Albert Einstein College of Medicine
Co-authored papers 15
Narcis Fernandez-Fuentes
Institute of Biological, Aberystwyth University
Co-authored papers 12
Mark R Chance
Case Western Reserve University
Co-authored papers 7
Dmitry Rykunov
Co-authored papers 6
Stephen K Burley
The State University of New Jersey
Co-authored papers 5
Marc A Marti-Renom
Universitat Pompeu Fabra (UPF)
Co-authored papers 5
Jeffrey B Bonanno
Albert Einstein College of Medicine
Co-authored papers 5
Krzysztof Fidelis
University of California davis
Co-authored papers 4
Ursula Pieper
University of California san francisco
Co-authored papers 4
Zsuzsanna Dosztányi
Co-authored papers 4
Andriy Kryshtafovych
University of California davis
Co-authored papers 4
Subramanyam Swaminathan
Brookhaven National Laboratory
Co-authored papers 4
J S Emtage
Co-authored papers 4
J Michael Sauder
Eli Lilly and Co.
Co-authored papers 4
Burkhard Rost
Technical University of Munich (TUM)
Co-authored papers 4
Mallur S Madhusudhan
Indian Institute of Science Education and Research Pune
Co-authored papers 4
Arturo Casadevall
Johns Hopkins Bloomberg School of Public Health
Co-authored papers 3
Udupi A Ramagopal
Poornaprajna Institute of Scientific Research (PPISR)
Co-authored papers 3
Stephen R Wasserman
Argonne National Laboratory
Co-authored papers 3
Adam Godzik
University of California Riverside
Co-authored papers 3
Kevin T Bain
NYU Langone Hospital - Brooklyn Brooklyn
Co-authored papers 3
Narayanan Eswar
University of California at San Francisco
Co-authored papers 3
Gaetano T Montelione
Rensselaer Polytechnic Institute
Co-authored papers 3
Ashley C Stuart
Columbia University
Co-authored papers 3
Lukasz Jaroszewski
University of California Riverside School of Medicine
Co-authored papers 2
Juri Rappsilber
Institute for Biotechnology, Technical University Berlin
Co-authored papers 2
Nebojsa Mirkovic
Weill Medical College of Cornell University
Co-authored papers 2
Anne R Bresnick
Albert Einstein College of Medicine
Co-authored papers 2
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