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Author Details

Chase W Nelson
Biodiversity Research Center, Taiwan Institute for Comparative Genomics
2011
24
16
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36812987Human papillomavirus genomics: Understanding carcinogenicity.Tumour Virus Res2023
33975951Discovering unknown human and mouse transcription factor binding sites and their characteristics from ChIP-seq data.Proc Natl Acad Sci U S A2021
33875847Genetic variation of staphylococcal LukAB toxin determines receptor tropism.Nat Microbiol2021
33888597Lack of transgenerational effects of ionizing radiation exposure from the Chernobyl accident.Science2021
33774510Conflicting and ambiguous names of overlapping ORFs in the SARS-CoV-2 genome: A homology-based resolution.Virology2021
34725254Plant ecological genomics at the limits of life in the Atacama Desert.Proc Natl Acad Sci U S A2021
34035952Transmission dynamics of SARS-CoV-2 within-host diversity in two major hospital outbreaks in South Africa.Virus Evol2021
32243542OLGenie: Estimating Natural Selection to Predict Functional Overlapping Genes.Mol Biol Evol2020
32060290Mutations in the HPV16 genome induced by APOBEC3 are associated with viral clearance.Nat Commun2020
33001029Dynamically evolving novel overlapping gene as a factor in the SARS-CoV-2 pandemic.Elife2020
29438321The Intersection of HPV Epidemiology, Genomics and Mechanistic Studies of HPV-Mediated Carcinogenesis.Viruses2018
29942654Selective constraint and adaptive potential of West Nile virus within and among naturally infected avian hosts and mosquito vectors.Virus Evol2018
27974564Within-Host Evolution of Simian Arteriviruses in Crab-Eating Macaques.J Virol2017
28886384HPV16 E7 Genetic Conservation Is Critical to Carcinogenesis.Cell2017
28902868Discovery of numerous novel small genes in the intergenic regions of the Escherichia coli O157:H7 Sakai genome.PLoS One2017
26867176Selective Bottlenecks Shape Evolutionary Pathways Taken during Mammalian Adaptation of a 1918-like Avian Influenza Virus.Cell Host Microbe2016
27170760Arteriviruses, Pegiviruses, and Lentiviruses Are Common among Wild African Monkeys.J Virol2016
26976476Remembering Austin L. Hughes.Infect Genet Evol2016
25481279Within-host nucleotide diversity of virus populations: insights from next-generation sequencing.Infect Genet Evol2015
26491171Conditional Immune Escape during Chronic Simian Immunodeficiency Virus Infection.J Virol2015
26227143SNPGenie: estimating evolutionary parameters to detect natural selection using pooled next-generation sequencing data.Bioinformatics2015
24651479High genetic diversity and adaptive potential of two simian hemorrhagic fever viruses in a wild primate population.PLoS One2014
24149915Selection on haemagglutinin imposes a bottleneck during mammalian transmission of reassortant H5N1 influenza viruses.Nat Commun2013
21501505The effects of low-impact mutations in digital organisms.Theor Biol Med Model2011
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Collaborators

Lisa Mirabello
National Cancer Institute
Co-authored papers 5
Zachary Ardern
Wellcome Trust Sanger Institute
Co-authored papers 4
Meredith Yeager
Frederick National Laboratory for Cancer Research
Co-authored papers 4
Michael Dean
National Cancer Institute
Co-authored papers 4
David H O'Connor
Co-authored papers 4
Nicolas Wentzensen
National Cancer Institute, National Institutes of Health
Co-authored papers 3
Jens H Kuhn
National Institute of Allergy and Infectious Diseases, National Institutes of Health
Co-authored papers 3
Joseph F Boland
National Cancer Institute, National Institutes of Health, Inc.
Co-authored papers 3
Laurie Burdett
National Cancer Institute, Frederick National Laboratory for Cancer Research
Co-authored papers 2
Yoshihiro Kawaoka
Influenza Research Institute, University of Wisconsin
Co-authored papers 2
Alexander E Gorbalenya
Leiden University Medical Center
Co-authored papers 1
Manolis Kellis
Massachusetts Institute of Technology
Co-authored papers 1
Nelson B Freimer
Co-authored papers 1
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 1
Kei Sato
The Institute of Medical Science, The University of Tokyo
Co-authored papers 1
Noah Stern
Weizmann Institute of Science
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Mingyi Wang
National Cancer Institute
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Chip Stewart
Broad Institute of MIT and Harvard
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Gad Getz
Broad Institute of the Massachusetts Institute of Technology and Harvard
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Stephen J Chanock
National Cancer Institute, National Institutes of Health
Co-authored papers 1
John Ziebuhr
Institute of Medical Virology Justus Liebig University
Co-authored papers 1
Maureen Hatch
Co-authored papers 1
Kiyohiko Mabuchi
National Cancer Institute
Co-authored papers 1
Tatyana Goldberg
TUM (Technical University of Munich) Department of Informatics
Co-authored papers 1
Dennis W Stevenson
University of British Columbia
Co-authored papers 1
Irwin Jungreis
Broad Institute of MIT and Harvard
Co-authored papers 1
Clara Bodelon
National Cancer Institute, National Institute of Health, 9 Medical Center Drive
Co-authored papers 1
Yaara Finkel
Weizmann Institute of Science
Co-authored papers 1
Gabriele Neumann
Influenza Research Institute, University of Wisconsin-Madison
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Andrew E Firth
University of Cambridge
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