Skip to Main Content

Author Details

Sebastian Schmeier
Massey University
2004
44
19
Trey Ideker (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37434131Identifying important microbial and genomic biomarkers for differentiating right- versus left-sided colorectal cancer using random forest models.BMC Cancer2023
37612266Bacterial lipopolysaccharide modulates immune response in the colorectal tumor microenvironment.NPJ Biofilms Microbiomes2023
37378317An epigenetic signature of advanced colorectal cancer metastasis.iScience2023
36291058Identifying Candidate Circulating RNA Markers for Coronary Artery Disease by Deep RNA-Sequencing in Human Plasma.Cells2022
35895506Host-Directed Targeting of LincRNA-MIR99AHG Suppresses Intracellular Growth of <i>Mycobacterium tuberculosis</i>.Nucleic Acid Ther2022
34258029Consensus molecular subtypes of primary colon tumors and their hepatic metastases.Future Sci OA2021
33779499Insights into circular RNAs: their biogenesis, detection, and emerging role in cardiovascular disease.RNA Biol2021
34768754Novel and Annotated Long Noncoding RNAs Associated with Ischemia in the Human Heart.Int J Mol Sci2021
32433701MinION Sequencing of colorectal cancer tumour microbiomes-A comparison with amplicon-based and RNA-Sequencing.PLoS One2020
33266128Deep Learning in LncRNAome: Contribution, Challenges, and Perspectives.Noncoding RNA2020
32120225Corrigendum to "Contrasting patterns of coding and flanking region evolution in mammalian keratin associated protein-1 genes" [Mol. Phylogenet. Evolut. 133 (2019) 352-361].Mol Phylogenet Evol2020
30669987Transcriptionally induced enhancers in the macrophage immune response to Mycobacterium tuberculosis infection.BMC Genomics2019
31775679Molecular subtyping improves prognostication of Stage 2 colorectal cancer.BMC Cancer2019
31278253Metagenomics and transcriptomics data from human colorectal cancer.Sci Data2019
30941122Differential Targeting of c-Maf, Bach-1, and Elmo-1 by microRNA-143 and microRNA-365 Promotes the Intracellular Growth of Mycobacterium tuberculosis in Alternatively IL-4/IL-13 Activated Macrophages.Front Immunol2019
30599197Contrasting patterns of coding and flanking region evolution in mammalian keratin associated protein-1 genes.Mol Phylogenet Evol2019
29712924Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages.Sci Rep2018
29617896An Evaluation of Function of Multicopy Noncoding RNAs in Mammals Using ENCODE/FANTOM Data and Comparative Genomics.Mol Biol Evol2018
27789689TcoF-DB v2: update of the database of human and mouse transcription co-factors and transcription factor interactions.Nucleic Acids Res2017
28387604DES-ncRNA: A knowledgebase for exploring information about human micro and long noncoding RNAs based on literature-mining.RNA Biol2017
28241135An atlas of human long non-coding RNAs with accurate 5' ends.Nature2017
29061167Genome-wide profiling of transcribed enhancers during macrophage activation.Epigenetics Chromatin2017
28912574Distinct gut microbiome patterns associate with consensus molecular subtypes of colorectal cancer.Sci Rep2017
31414702IRNdb: the database of immunologically relevant non-coding RNAs.Database (Oxford)2016
25790379IL-4Rα-dependent alternative activation of macrophages is not decisive for Mycobacterium tuberculosis pathology and bacterial burden in mice.PLoS One2015
26117544Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics.Nucleic Acids Res2015
25957166Batf2/Irf1 induces inflammatory responses in classically activated macrophages, lipopolysaccharides, and mycobacterial infection.J Immunol2015
24670764A promoter-level mammalian expression atlas.Nature2014
23101584Identification of estrogen responsive genes using esophageal squamous cell carcinoma (ESCC) as a model.BMC Syst Biol2012
20880996DDPC: Dragon Database of Genes associated with Prostate Cancer.Nucleic Acids Res2011
22050994Network analysis of microRNAs and their regulation in human ovarian cancer.BMC Syst Biol2011
21923952In Silico discovery of transcription factors as potential diagnostic biomarkers of ovarian cancer.BMC Syst Biol2011
21750739Simplified method to predict mutual interactions of human transcription factors based on their primary structure.PLoS One2011
21326606dPORE-miRNA: polymorphic regulation of microRNA genes.PLoS One2011
21063956Text mining for systems modeling.Methods Mol Biol2011
20965969TcoF-DB: dragon database for human transcription co-factors and transcription factor interacting proteins.Nucleic Acids Res2011
20211142An atlas of combinatorial transcriptional regulation in mouse and man.Cell2010
18790805Database for exploration of functional context of genes implicated in ovarian cancer.Nucleic Acids Res2009
20003307Deciphering the transcriptional circuitry of microRNA genes expressed during human monocytic differentiation.BMC Genomics2009
19580656DDEC: Dragon database of genes implicated in esophageal cancer.BMC Cancer2009
19377474The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.Nat Genet2009
18851734Prioritizing genes of potential relevance to diseases affected by sex hormones: an example of myasthenia gravis.BMC Genomics2008
15572464MACAT--microarray chromosome analysis tool.Bioinformatics2005
15268772Finding kinetic parameters using text mining.OMICS2004
  • 1 - 44 of 44

Recommended Authors

Asha A Nair
Mayo Clinic
Career Start Year 2010
Number of shared co-authors 0
Jianlei Gu
Yale University
Career Start Year 2009
Number of shared co-authors 0
Lana X Garmire
University of Michigan ann arbor
Career Start Year 2007
Number of shared co-authors 1
Jing Chen
College of Bioinformatics Science and Technology, Harbin Medical University
Career Start Year 2007
Number of shared co-authors 1
David L Corcoran
The University of North Carolina at Chapel Hill
Career Start Year 2005
Number of shared co-authors 1
Chao Cheng
Baylor College of Medicine
Career Start Year 2005
Number of shared co-authors 4
David J Arenillas
BC Children's Hospital Research Institute, University of British Columbia
Career Start Year 2005
Number of shared co-authors 28
Francesca Rizzo
University of Salerno and Genome Research Center for Health
Career Start Year 2004
Number of shared co-authors 0
Stephen A Ramsey
Oregon State University
Career Start Year 2004
Number of shared co-authors 1
Christopher Benner
Michigan State University College of Human Medicine
Career Start Year 2004
Number of shared co-authors 3
P??l S??trom
Norwegian University of Science and Technology (NTNU)
Career Start Year 2004
Number of shared co-authors 55
Sarath Chandra Janga
Indiana University
Career Start Year 2004
Number of shared co-authors 1
Quaid Morris
Sloan Kettering Institute
Career Start Year 2003
Number of shared co-authors 1
Pavel Sumazin
Baylor College of Medicine
Career Start Year 2003
Number of shared co-authors 1
Matthew T Weirauch
University of Cincinnati College of Medicine
Career Start Year 2003
Number of shared co-authors 11
Pedro A F Galante
Hospital Sirio Libanes
Career Start Year 2003
Number of shared co-authors 2
Andrew V Kossenkov
The Wistar Institute
Career Start Year 2003
Number of shared co-authors 1
F??tima Al-Shahrour
Spanish National Cancer Research Centre (CNIO)
Career Start Year 2003
Number of shared co-authors 0
Zhaolei Zhang
University of Toronto
Career Start Year 2002
Number of shared co-authors 0
Mikhail G Dozmorov
Virginia Commonwealth University
Career Start Year 2001
Number of shared co-authors 0
Hedi Peterson
Institute of Computer Science, University of Tartu
Career Start Year 2000
Number of shared co-authors 0
Celine Lefebvre
The Scripps Research Institute
Career Start Year 1999
Number of shared co-authors 1
Ramana V Davuluri
The Wistar Institute
Career Start Year 1999
Number of shared co-authors 0
Youping Deng
John A. Burns School of Medicine, University of Hawaii at Manoa
Career Start Year 1999
Number of shared co-authors 5
Zhongming Zhao
Center for Precision Health, The University of Texas Health Science Center at Houston
Career Start Year 1998
Number of shared co-authors 0
Igor Jurisica
Schroeder Arthritis Institute
Career Start Year 1998
Number of shared co-authors 2
Benedikt Brors
German Cancer Research Center (DKFZ)
Career Start Year 1997
Number of shared co-authors 9
Panayiotis V Benos
University of Florida
Career Start Year 1996
Number of shared co-authors 1
Jaak Vilo
Institute of Computer Science, University of Tartu
Career Start Year 1996
Number of shared co-authors 4
Tatsuhiko Tsunoda
The University of Tokyo
Career Start Year 1984
Number of shared co-authors 4

Collaborators

Vladimir B Bajic
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 18
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 14
Frank Brombacher
University of Cape Town
Co-authored papers 11
Reto Guler
International Centre for Genetic Engineering and Biotechnology
Co-authored papers 10
Mandeep Kaur
Post Graduate Institute of Medical Education and Research
Co-authored papers 8
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 8
Ulf Schaefer
Co-authored papers 8
Sugata Roy
RIKEN Center for Integrative Medical Sciences
Co-authored papers 7
Tanvir Alam
College of Science and Engineering, Hamad Bin Khalifa University
Co-authored papers 7
Cameron Ross MacPherson
Rigshospitalet, Copenhagen University Hospital
Co-authored papers 7
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 6
Aleksandar Radovanovic
Computational Bioscience Research Center (CBRC)
Co-authored papers 6
Timo Lassmann
Telethon Kids Institute, University of Western Australia
Co-authored papers 6
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 6
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 6
Dave S B Hoon
Saint John's Cancer Institute at Saint John's Health Center
Co-authored papers 5
Erik Arner
RIKEN Center for Integrative Medical Sciences (IMS)
Co-authored papers 5
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 4
Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 4
Julian Gough
Medical Research Council Laboratory of Molecular Biology
Co-authored papers 4
Atsutaka Kubosaki
National Institute of Health Sciences.
Co-authored papers 4
Nicolas Bertin
University Bordeaux, CNRS
Co-authored papers 4
Oliver Hofmann
University of Melbourne
Co-authored papers 4
Winston Hide
Harvard Medical School
Co-authored papers 4
Noriko Ninomiya
Japan Tobacco Inc.
Co-authored papers 3
Bogumil Kaczkowski
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Marina Lizio
Cerevance Ltd
Co-authored papers 3
Erik van Nimwegen
University of Basel
Co-authored papers 3
Michihira Tagami
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Alan Christoffels
Co-authored papers 3
Release 1.2