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Author Details

Aaron A Best
Hope College
2001
32
17
PMIDPaper TitleJournal TitlePublished Year
37314210Predicting variable gene content in <i>Escherichia coli</i> using conserved genes.mSystems2023
32986834The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.Nucleic Acids Res2021
33909163A global reconnaissance of particulates and metals/metalloids in untreated drinking water sources.Environ Monit Assess2021
33179751The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes.Nucleic Acids Res2021
32528610Supporting Students from Day 1 of College: The Importance of Relatedness to Inclusivity.J Microbiol Biol Educ2020
30864320Implementing and evaluating a Gaussian mixture framework for identifying gene function from TnSeq data.Pac Symp Biocomput2019
31410085Evaluating the efficacy of point-of-use water filtration units in Fiji.Trop Med Health2019
29979655KBase: The United States Department of Energy Systems Biology Knowledgebase.Nat Biotechnol2018
27896957IDENTIFICATION AND ANALYSIS OF BACTERIAL GENOMIC METABOLIC SIGNATURES.Pac Symp Biocomput2017
28101086Characterization of Gut Microbiome Dynamics in Developing Pekin Ducks and Impact of Management System.Front Microbiol2017
29217790Genome Sequences of Mycobacteriophages Amgine, Amohnition, Bella96, Cain, DarthP, Hammy, Krueger, LastHope, Peanam, PhelpsODU, Phrank, SirPhilip, Slimphazie, and Unicorn.Genome Announc2017
28751402Whole-Genome Shotgun Sequences of <i>Salmonella enterica</i> Serovar Typhimurium Lilleengen Type Strains LT1, LT18, LT19, LT20, LT21, and LT22.Genome Announc2017
26769272Increased water contamination and grow-out Pekin duck mortality when raised with water troughs compared to pin-metered water lines using a United States management system.Poult Sci2016
27933038Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation.Front Microbiol2016
27555837A Bayesian Framework for the Classification of Microbial Gene Activity States.Front Microbiol2016
26167162Cautions about the reliability of pairwise gene correlations based on expression data.Front Microbiol2015
23398941Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria.BMC Genomics2013
24391637Comparative genomics and functional analysis of rhamnose catabolic pathways and regulons in bacteria.Front Microbiol2013
23874930Cluster J mycobacteriophages: intron splicing in capsid and tail genes.PLoS One2013
23417797Automated genome annotation and metabolic model reconstruction in the SEED and Model SEED.Methods Mol Biol2013
22873695Evaluating the consistency of gene sets used in the analysis of bacterial gene expression data.BMC Bioinformatics2012
22885293Diversity and versatility of the Thermotoga maritima sugar kinome.J Bacteriol2012
21421023Connecting genotype to phenotype in the era of high-throughput sequencing.Biochim Biophys Acta2011
21531804Inference of the transcriptional regulatory network in Staphylococcus aureus by integration of experimental and genomics-based evidence.J Bacteriol2011
21298013Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution.PLoS One2011
20802497High-throughput generation, optimization and analysis of genome-scale metabolic models.Nat Biotechnol2010
18261238The RAST Server: rapid annotations using subsystems technology.BMC Genomics2008
18986519Gene set analyses for interpreting microarray experiments on prokaryotic organisms.BMC Bioinformatics2008
17462086Toward the automated generation of genome-scale metabolic networks in the SEED.BMC Bioinformatics2007
17901334Genomic minimalism in the early diverging intestinal parasite Giardia lamblia.Science2007
15289474Evolution of eukaryotic transcription: insights from the genome of Giardia lamblia.Genome Res2004
11167000Similar subunit architecture of archaeal and eukaryal RNA polymerases.FEMS Microbiol Lett2001
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Collaborators

Hope College
Co-authored papers 16
The Fatty Acid Research Institute
Co-authored papers 10
Argonne National Laboratory
Co-authored papers 8
University of Illinois
Co-authored papers 5
Argonne National Laboratory
Co-authored papers 5
University of Chicago
Co-authored papers 4
Sanford Burnham Prebys Medical Discovery Institute
Co-authored papers 4
University of Chicago
Co-authored papers 4
Argonne National Laboratory
Co-authored papers 4
Computation Institute, University of Chicago
Co-authored papers 4
Sanford Burnham Prebys Medical Discovery Institute
Co-authored papers 4
Argonne National Laboratory
Co-authored papers 3
E.O. Lawrence Berkeley National Laboratory
Co-authored papers 3
Lawrence Berkeley National Laboratory
Co-authored papers 3
Argonne National Laboratory
Co-authored papers 3
Oak Ridge National Laboratory
Co-authored papers 3
Argonne National Laboratory
Co-authored papers 3
University of Pittsburgh
Co-authored papers 3
University of Chicago
Co-authored papers 3
Lawrence Berkeley National Laboratory
Co-authored papers 3
Institute for Artificial Intelligence, University of Duisburg-Essen
Co-authored papers 3
Lawrence Berkeley National Laboratory
Co-authored papers 3
Brookhaven National Laboratory
Co-authored papers 2
Argonne National Laboratory
Co-authored papers 2
University of Chicago
Co-authored papers 2
Lawrence Berkeley National Laboratory
Co-authored papers 2
University of California at San Diego
Co-authored papers 2
Lawrence Livermore National Laboratory
Co-authored papers 2
Argonne National Laboratory
Co-authored papers 2
Co-authored papers 2