Author details

Full Name

Yan Cui

Affiliation

University of Tennessee Health Science Center

ORCID

Career Start Year

1998

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37302664	Gene network based analysis identifies a coexpression module involved in regulating plasma lipids with high-fat diet response.	J Nutr Biochem	2023
37313229	Transcriptomic profiling identifies differentially expressed genes and related pathways associated with wound healing and cuproptosis-related genes in Ganxi goats.	Front Vet Sci	2023
37104653	Addressing the Challenge of Biomedical Data Inequality: An Artificial Intelligence Perspective.	Annu Rev Biomed Data Sci	2023
36304416	Integrative analysis identifies potential ferroptosis-related genes of hypoxia adaptation in yak.	Front Vet Sci	2022
35757279	Clinical time-to-event prediction enhanced by incorporating compatible related outcomes.	PLOS Digit Health	2022
36180780	Serine metabolism orchestrates macrophage polarization by regulating the IGF1-p38 axis.	Cell Mol Immunol	2022
34552269	Gene-by-environment modulation of lifespan and weight gain in the murine BXD family.	Nat Metab	2021
33488611	Genetic Dissection of the Regulatory Mechanisms of <i>Ace2</i> in the Infected Mouse Lung.	Front Immunol	2021
33529666	Characterizing modifier genes of cardiac fibrosis phenotype in hypertrophic cardiomyopathy.	Int J Cardiol	2021
35003334	Using machine learning to classify patients on opioid use.	J Pharm Health Serv Res	2021
33330645	The Genetic Dissection of <i>Ace2</i> Expression Variation in the Heart of Murine Genetic Reference Population.	Front Cardiovasc Med	2020
30963491	Functional Analysis of Genetic Variants and Somatic Mutations Impacting MicroRNA-Target Recognition: Bioinformatics Resources.	Methods Mol Biol	2019
29993662	Transfer Learning for Molecular Cancer Classification Using Deep Neural Networks.	IEEE/ACM Trans Comput Biol Bioinform	2019
31375728	Differential gene expression analysis reveals novel genes and pathways in pediatric septic shock patients.	Sci Rep	2019
31107656	Type-2 Fuzzy PCA Approach in Extracting Salient Features for Molecular Cancer Diagnostics and Prognostics.	IEEE Trans Nanobioscience	2019
29362439	Deletion of DGCR8 in VSMCs of adult mice results in loss of vascular reactivity, reduced blood pressure and neointima formation.	Sci Rep	2018
27933532	Precise Network Modeling of Systems Genetics Data Using the Bayesian Network Webserver.	Methods Mol Biol	2017
28646174	A GPU-accelerated algorithm for biclustering analysis and detection of condition-dependent coexpression network modules.	Sci Rep	2017
28637929	Systematic Prediction of the Impacts of Mutations in MicroRNA Seed Sequences.	J Integr Bioinform	2017
26578591	SomamiR 2.0: a database of cancer somatic mutations altering microRNA-ceRNA interactions.	Nucleic Acids Res	2016
25446528	CbGRiTS: cerebellar gene regulation in time and space.	Dev Biol	2015
26564979	Knowledge-based analysis of functional impacts of mutations in microRNA seed regions.	J Biosci	2015
25762653	miR2GO: comparative functional analysis for microRNAs.	Bioinformatics	2015
24163105	PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways.	Nucleic Acids Res	2014
25159302	Pre-transplant predictors of one yr weight gain after kidney transplantation.	Clin Transplant	2014
24611733	In silico mapping of polymorphic miRNA-mRNA interactions in autoimmune thyroid diseases.	Autoimmunity	2014
24687986	Genetic control of weight loss during pneumonic Burkholderia pseudomallei infection.	Pathog Dis	2014
23180788	SomamiR: a database for somatic mutations impacting microRNA function in cancer.	Nucleic Acids Res	2013
23969134	Bayesian Network Webserver: a comprehensive tool for biological network modeling.	Bioinformatics	2013
23637774	miRNA biogenesis enzyme Drosha is required for vascular smooth muscle cell survival.	PLoS One	2013
23193294	CTCFBSDB 2.0: a database for CTCF-binding sites and genome organization.	Nucleic Acids Res	2013
22080514	PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits.	Nucleic Acids Res	2012
23091610	Integrative analysis of somatic mutations altering microRNA targeting in cancer genomes.	PLoS One	2012
23049969	Systematic analysis of microRNA targeting impacted by small insertions and deletions in human genome.	PLoS One	2012
22438999	Host genetics and Chlamydia disease: prediction and validation of disease severity mechanisms.	PLoS One	2012
22359631	Treatment- and population-dependent activity patterns of behavioral and expression QTLs.	PLoS One	2012
21179437	Expression QTL modules as functional components underlying higher-order phenotypes.	PLoS One	2010
17981843	CTCFBSDB: a CTCF-binding site database for characterization of vertebrate genomic insulators.	Nucleic Acids Res	2008
17099235	PolymiRTS Database: linking polymorphisms in microRNA target sites with complex traits.	Nucleic Acids Res	2007
17428815	An integrative genomics strategy for systematic characterization of genetic loci modulating phenotypes.	Hum Mol Genet	2007
16344563	Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression.	Genome Res	2006
16783639	Combining gene expression QTL mapping and phenotypic spectrum analysis to uncover gene regulatory relationships.	Mamm Genome	2006
16738136	Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray.	Nucleic Acids Res	2006
16442527	Functional impacts of non-synonymous single nucleotide polymorphisms: selective constraint and structural environments.	FEBS Lett	2006
16371421	Integrative genetic analysis of transcription modules: towards filling the gap between genetic loci and inherited traits.	Hum Mol Genet	2006
15772094	Inferring gene transcriptional modulatory relations: a genetical genomics approach.	Hum Mol Genet	2005
15980516	nsSNPAnalyzer: identifying disease-associated nonsynonymous single nucleotide polymorphisms.	Nucleic Acids Res	2005
15746281	Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information.	Bioinformatics	2005
15268770	Integrated analysis of microarray data and gene function information.	OMICS	2004
23345874	Autosomal similarity revealed by eukaryotic genomic comparison.	J Biol Phys	2004

1 - 50 of 59

Jianlei Gu

Yale University

Career Start Year 2009

Number of shared co-authors 0

Jing Chen

College of Bioinformatics Science and Technology, Harbin Medical University

Career Start Year 2007

Number of shared co-authors 0

Peilin Jia

Center for Precision Health, The University of Texas Health Science Center at Houston

Career Start Year 2006

Number of shared co-authors 0

David L Corcoran

The University of North Carolina at Chapel Hill

Career Start Year 2005

Number of shared co-authors 0

Dongxiao Zhu

Wayne State University

Career Start Year 2005

Number of shared co-authors 0

Christopher L Plaisier

Arizona State University

Career Start Year 2005

Number of shared co-authors 0

Stephen A Ramsey

Oregon State University

Career Start Year 2004

Number of shared co-authors 0

Weidong Tian

Institute of Biostatistics, Fudan University

Career Start Year 2003

Number of shared co-authors 0

Manolis Kellis

Massachusetts Institute of Technology

Career Start Year 2003

Number of shared co-authors 1

Quaid Morris

Sloan Kettering Institute

Career Start Year 2003

Number of shared co-authors 0

Zhaolei Zhang

University of Toronto

Career Start Year 2002

Number of shared co-authors 0

Zhaohui S Qin

Emory University

Career Start Year 2002

Number of shared co-authors 0

Sven Bergmann

University of Lausanne

Career Start Year 2002

Number of shared co-authors 0

Sean D Mooney

University of Washington

Career Start Year 2001

Number of shared co-authors 0

Alexander V Favorov

Johns Hopkins School of Medicine

Career Start Year 1999

Number of shared co-authors 3

Wei Wang

IBM Thomas J Watson Research Center, University of California Los Angeles, University of North Carolina at Chapel Hill

Career Start Year 1999

Number of shared co-authors 2

Youping Deng

John A. Burns School of Medicine, University of Hawaii at Manoa

Career Start Year 1999

Number of shared co-authors 0

Frederick P Roth

University of Toronto

Career Start Year 1998

Number of shared co-authors 0

Eric E Schadt

Icahn School of Medicine at Mount Sinai

Career Start Year 1998

Number of shared co-authors 6

Zhongming Zhao

Center for Precision Health, The University of Texas Health Science Center at Houston

Career Start Year 1998

Number of shared co-authors 1

Shannon K McWeeney

Oregon Health & Science University, University of California Berkeley

Career Start Year 1997

Number of shared co-authors 7

Xiaoming Liu

College of Electronic Science and Engineering, Jilin University

Career Start Year 1997

Number of shared co-authors 0

Panayiotis V Benos

University of Florida

Career Start Year 1996

Number of shared co-authors 0

Hongyu Zhao

Yale University

Career Start Year 1995

Number of shared co-authors 1

Steven J M Jones

University of British Columbia

Career Start Year 1995

Number of shared co-authors 1

Zhiping Weng

University of Massachusetts Medical School

Career Start Year 1992

Number of shared co-authors 0

Andreas Beyer

University of Cologne

Career Start Year 1991

Number of shared co-authors 2

Mark Gerstein

Yale University

Career Start Year 1991

Number of shared co-authors 1

Winston Hide

Harvard Medical School

Career Start Year 1991

Number of shared co-authors 5

Tatsuhiko Tsunoda

The University of Tokyo

Career Start Year 1984

Number of shared co-authors 0

row(s) 1 - 30 of 30

Robert W Williams

Mayo Clinic

Co-authored papers 12

Lu Lu

University of Tennessee Health Science Center

Co-authored papers 12

Wing Hung Wong

Stanford University

Co-authored papers 7

Dan Goldowitz

University of British Columbia

Co-authored papers 4

Elissa J Chesler

Center for Systems Neurogenetics of Addiction at The Jackson Laboratory

Co-authored papers 3

Evan G Williams

University of Luxembourg

Co-authored papers 2

Xiaopeng Zhu

Co-authored papers 2

Erich Bornberg-Bauer

Institute for Evolution and Biodiversity, University of Munster

Co-authored papers 1

Peter Zhang

Child and Family Research Institute, University of British Columbia

Co-authored papers 1

Jeffrey A Towbin

University of Tennessee Health Science Center

Co-authored papers 1

Michael A Langston

University of Tennessee

Co-authored papers 1

Richard A Miller

University of Michigan School of Medicine ann arbor

Co-authored papers 1

Amy C Sims

The University of North Carolina at Chapel Hill

Co-authored papers 1

Lei Bao

Moores Cancer Center, university of california san diego Health System

Co-authored papers 1

Tao Liu

Co-authored papers 1

Megan K Mulligan

University of Tennessee Health Science Center.

Co-authored papers 1

Saunak Sen

University of Tennessee Health Science Center

Co-authored papers 1

Klaus Schughart

University of Tennessee Health Science Center

Co-authored papers 1

Valeria R Mas

University of Maryland School of Medicine

Co-authored papers 1

Sarah M Neuner

Icahn School of Medicine at Mount Sinai

Co-authored papers 1

Guozhen Liu

Co-authored papers 1

James D Eason

University of Tennessee Health Science Center

Co-authored papers 1

Rishikesan Kamaleswaran

Duke University, Emory University, Society for Critical Care Medicine, University of Ontario Institute of Technology, University of Tennessee Health Science Center

Co-authored papers 1

Ralph S Baric

University of North Carolina

Co-authored papers 1

Thomas J Ha

University of British Columbia and BC Children's Hospital

Co-authored papers 1

Nico van Rooijen

Co-authored papers 1

Akram Mohammed

University of Tennessee Health Science Center

Co-authored papers 1