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Author Details

Ana Pombo
Polytechnic Institute of Leiria
1994
104
45
PMIDPaper TitleJournal TitlePublished Year
36702945Evaluating sea cucumbers as extractive species for benthic bioremediation in mussel farms.Sci Rep2023
37454008Use of the gonadal tissue of the sea urchin Paracentrotus lividus as a target for environmental contamination by trace metals.Environ Sci Pollut Res Int2023
37174578Comparison of the Efficiency of Different Eradication Treatments to Minimize the Impacts Caused by the Invasive Tunicate <i>Styela plicata</i> in Mussel Aquaculture.Animals (Basel)2023
37336949Multiplex-GAM: genome-wide identification of chromatin contacts yields insights overlooked by Hi-C.Nat Methods2023
33974169Altered nuclear architecture in blood cells from Huntington's disease patients.Neurol Sci2022
35625350Reproductive Biology of the Sea Cucumber <i>Holothuria mammata</i> (Echinodermata: Holothuroidea).Biology (Basel)2022
36777038Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in zebrafish embryos.Cell Genom2022
33421764The dynamics of chromatin architecture in brain development and function.Curr Opin Genet Dev2021
33830196GAMIBHEAR: whole-genome haplotype reconstruction from Genome Architecture Mapping data.Bioinformatics2021
33731935Publisher Correction: LifeTime and improving European healthcare through cell-based interceptive medicine.Nature2021
34789882Cell-type specialization is encoded by specific chromatin topologies.Nature2021
34600116Potential use of macroalgae Gracilaria gracilis in diets for European seabass (Dicentrarchus labrax): Health benefits from a sustainable source.Fish Shellfish Immunol2021
34480161Publisher Correction: Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin.Nat Methods2021
33963348Comparison of the Hi-C, GAM and SPRITE methods using polymer models of chromatin.Nat Methods2021
31604121Inference of chromosome 3D structures from GAM data by a physics computational approach.Methods2020
31848476Methods for mapping 3D chromosome architecture.Nat Rev Genet2020
32894860LifeTime and improving European healthcare through cell-based interceptive medicine.Nature2020
32473574Evolving methodologies and concepts in 4D nucleome research.Curr Opin Cell Biol2020
30903559Fungal diversity and mycotoxin distribution in echinoderm aquaculture.Mycotoxin Res2019
31547964Editorial overview: Genome architecture and expression.Curr Opin Genet Dev2019
30709709R-Loops Enhance Polycomb Repression at a Subset of Developmental Regulator Genes.Mol Cell2019
29662163Polymer physics predicts the effects of structural variants on chromatin architecture.Nat Genet2018
30262815Challenges and guidelines toward 4D nucleome data and model standards.Nat Genet2018
28652613Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression.Nat Commun2017
28485733Maternal immune activation results in complex microglial transcriptome signature in the adult offspring that is reversed by minocycline treatment.Transl Psychiatry2017
28436944Active and poised promoter states drive folding of the extended HoxB locus in mouse embryonic stem cells.Nat Struct Mol Biol2017
28273065Complex multi-enhancer contacts captured by genome architecture mapping.Nature2017
28475876Keep Them Close: PRC2 Poises Enhancer-Promoter Interactions at Anterior Neuronal Genes.Cell Stem Cell2017
28157500A Finer Print Than TADs: PRC1-Mediated Domains.Mol Cell2017
29038337RNA polymerase II primes Polycomb-repressed developmental genes throughout terminal neuronal differentiation.Mol Syst Biol2017
28850106FANTOM5 CAGE profiles of human and mouse samples.Sci Data2017
28682328Cell cycle: Continuous chromatin changes.Nature2017
27398909Mechanical regulation of transcription controls Polycomb-mediated gene silencing during lineage commitment.Nat Cell Biol2016
27706140Formation of new chromatin domains determines pathogenicity of genomic duplications.Nature2016
27923117Examining Topological Domain Influence on Enhancer Function.Dev Cell2016
27452946Gene activation by metazoan enhancers: Diverse mechanisms stimulate distinct steps of transcription.Bioessays2016
25757416Three-dimensional genome architecture: players and mechanisms.Nat Rev Mol Cell Biol2015
26687004Methylation of RNA polymerase II non-consensus Lysine residues marks early transcription in mammalian cells.Elife2015
26700852Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation.Mol Syst Biol2015
25678556Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.Science2015
24430871An H3K9/S10 methyl-phospho switch modulates Polycomb and Pol II binding at repressed genes during differentiation.Mol Biol Cell2014
25764220Physical mechanisms behind the large scale features of chromatin organization.Transcription2014
25032261Stem cell epigenetics: looking forward.Cell Stem Cell2014
24804566Models of chromosome structure.Curr Opin Cell Biol2014
23514144A model of the large-scale organization of chromatin.Biochem Soc Trans2013
23823730A polymer model explains the complexity of large-scale chromatin folding.Nucleus2013
23802011Polymer models of chromatin organization.Front Genet2013
22199231Proteomic analysis of mitotic RNA polymerase II reveals novel interactors and association with proteins dysfunctional in disease.Mol Cell Proteomics2012
23162423Mean Expression of the X-Chromosome is Associated with Neuronal Density.Front Neurosci2012
22988072Complexity of chromatin folding is captured by the strings and binders switch model.Proc Natl Acad Sci U S A2012
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Collaborators

Carmelo Ferrai
Institute of Pathology, University Medical Center
Co-authored papers 9
Kelly J Morris
Berlin Institute for Medical Systems Biology
Co-authored papers 5
Haruhiko Koseki
RIKEN Research Center for Allergy and Immunology
Co-authored papers 4
Hans Clevers
Princess Maxima Center for Pediatric Oncology
Co-authored papers 3
Sarah A Teichmann
Wellcome Sanger Institute
Co-authored papers 3
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 3
Masayoshi Itoh
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Marc A Marti-Renom
Universitat Pompeu Fabra (UPF)
Co-authored papers 3
Susan M Gasser
L'Institut Suisse de Recherche Experimentale sur le Cancer (ISREC) Foundation
Co-authored papers 3
John C Marioni
Cancer Research UK Cambridge Institute, University of Cambridge
Co-authored papers 3
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Maria-Elena Torres-Padilla
Institute of Epigenetics and Stem Cells (IES)
Co-authored papers 3
Altuna Akalin
Berlin Institute for Medical Systems Biology
Co-authored papers 3
Alistair R R Forrest
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Reto Guler
International Centre for Genetic Engineering and Biotechnology
Co-authored papers 2
Soichi Ogishima
Tohoku University Graduate School of Medicine
Co-authored papers 2
Oliver Stegle
Wellcome Sanger Institute
Co-authored papers 2
Dan Goldowitz
University of British Columbia
Co-authored papers 2
Carsten O Daub
International Institute of Molecular and Cell Biology in Warsaw
Co-authored papers 2
Michael Detmar
Institute of Pharmaceutical Sciences, ETH Zurich
Co-authored papers 2
Carlos-Filipe Pereira
Co-authored papers 2
Naoto Kondo
Nagoya City University Graduate School of Medical Sciences
Co-authored papers 2
Serkan Sahin
RIKEN Center for Life Science Technologies
Co-authored papers 2
Peter Zhang
Child and Family Research Institute, University of British Columbia
Co-authored papers 2
Norbert H??bner
Max Delbruck Center for Molecular Medicine in the Helmholtz Association (MDC)
Co-authored papers 2
Ernst J Wolvetang
Australian Institute for Bioengineering and Nanotechnology, University of Queensland
Co-authored papers 2
Christine L Mummery
Leiden University Medical Center
Co-authored papers 2
Suzana Savvi
South African Medical Research Council (SAMRC), University of Cape Town
Co-authored papers 2
Yosuke Mizuno
Yokohama National University
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Release 1.2