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Author Details

Elena Zaslavsky
Icahn School of Medicine at Mount Sinai
2004
47
18
PMIDPaper TitleJournal TitlePublished Year
38095016Fast and slow muscle fiber transcriptome dynamics with lifelong endurance exercise.J Appl Physiol (1985)2024
37961197Automated single-cell omics end-to-end framework with data-driven batch inference.bioRxiv2024
36936082Blood RNA alternative splicing events as diagnostic biomarkers for infectious disease.Cell Rep Methods2023
37808658Integrated single-cell multiome analysis reveals muscle fiber-type gene regulatory circuitry modulated by endurance exercise.bioRxiv2023
37974651Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data.Nat Comput Sci2023
36919946A methylation clock model of mild SARS-CoV-2 infection provides insight into immune dysregulation.Mol Syst Biol2023
34657158Anti-invasive efficacy and survival benefit of the YAP-TEAD inhibitor verteporfin in preclinical glioblastoma models.Neuro Oncol2022
35479098Asymptomatic SARS-CoV-2 Infection Is Associated With Higher Levels of Serum IL-17C, Matrix Metalloproteinase 10 and Fibroblast Growth Factors Than Mild Symptomatic COVID-19.Front Immunol2022
35693209Multi-omics profiling of single nuclei from frozen archived postmortem human pituitary tissue.STAR Protoc2022
36549275Multi-objective optimization identifies a specific and interpretable COVID-19 host response signature.Cell Syst2022
36549274Benchmarking transcriptional host response signatures for infection diagnosis.Cell Syst2022
36443832Correction: High-resolution transcriptomics informs glial pathology in human temporal lobe epilepsy.Acta Neuropathol Commun2022
36274170High-resolution transcriptomics informs glial pathology in human temporal lobe epilepsy.Acta Neuropathol Commun2022
36323307Pre-infection antiviral innate immunity contributes to sex differences in SARS-CoV-2 infection.Cell Syst2022
35068187Skeletal muscle transcriptome response to a bout of endurance exercise in physically active and sedentary older adults.Am J Physiol Endocrinol Metab2022
35263594Single nucleus transcriptome and chromatin accessibility of postmortem human pituitaries reveal diverse stem cell regulatory mechanisms.Cell Rep2022
34335598Comparing Host Module Activation Patterns and Temporal Dynamics in Infection by Influenza H1N1 Viruses.Front Immunol2021
33532780mRNA-1273 efficacy in a severe COVID-19 model: attenuated activation of pulmonary immune cells after challenge.bioRxiv2021
34449440Attenuated activation of pulmonary immune cells in mRNA-1273-vaccinated hamsters after SARS-CoV-2 infection.J Clin Invest2021
34339864Advances in the computational landscape for repurposed drugs against COVID-19.Drug Discov Today2021
32459070Distinct peripheral blood molecular signature emerges with successful tacrolimus withdrawal in kidney transplant recipients.Am J Transplant2020
31937892Single-cell transcriptional profiles in human skeletal muscle.Sci Rep2020
33225996Deciphering the combinatorial landscape of immunity.Elife2020
31249421Pathway-level information extractor (PLIER) for gene expression data.Nat Methods2019
31375585Innate Immune Response to Influenza Virus at Single-Cell Resolution in Human Epithelial Cells Revealed Paracrine Induction of Interferon Lambda 1.J Virol2019
29487567Regulatory Architecture of the LβT2 Gonadotrope Cell Underlying the Response to Gonadotropin-Releasing Hormone.Front Endocrinol (Lausanne)2018
30061115High resolution annotation of zebrafish transcriptome using long-read sequencing.Genome Res2018
30478325Interpretation of an individual functional genomics experiment guided by massive public data.Nat Methods2018
30275445Analysis of chromatin accessibility uncovers TEAD1 as a regulator of migration in human glioblastoma.Nat Commun2018
29203926Pandemic H1N1 influenza A viruses suppress immunogenic RIPK3-driven dendritic cell death.Nat Commun2017
28434940Prospective Isolation and Comparison of Human Germinal Matrix and Glioblastoma EGFR<sup>+</sup> Populations with Stem Cell Properties.Stem Cell Reports2017
27213272The Transcriptional Activator Krüppel-like Factor-6 Is Required for CNS Myelination.PLoS Biol2016
25583121CellCODE: a robust latent variable approach to differential expression analysis for heterogeneous cell populations.Bioinformatics2015
26362267Interactive Big Data Resource to Elucidate Human Immune Pathways and Diseases.Immunity2015
26223639Human Dendritic Cell Response Signatures Distinguish 1918, Pandemic, and Seasonal H1N1 Influenza Viruses.J Virol2015
25915600Understanding multicellular function and disease with human tissue-specific networks.Nat Genet2015
25805644Astrocytic TYMP and VEGFA drive blood-brain barrier opening in inflammatory central nervous system lesions.Brain2015
23211523β-catenin regulates GnRH-induced FSHβ gene expression.Mol Endocrinol2013
23734902Reconstruction of regulatory networks through temporal enrichment profiling and its application to H1N1 influenza viral infection.BMC Bioinformatics2013
22544465Computational approaches to understanding dendritic cell responses to influenza virus infection.Immunol Res2012
22081765A cost-aggregating integer linear program for motif finding.J Discrete Algorithms (Amst)2011
20164420Antiviral response dictated by choreographed cascade of transcription factors.J Immunol2010
20976110Inferring PDZ domain multi-mutant binding preferences from single-mutant data.PLoS One2010
20657661The construction and use of log-odds substitution scores for multiple sequence alignment.PLoS Comput Biol2010
19223448M are better than one: an ensemble-based motif finder and its application to regulatory element prediction.Bioinformatics2009
16916460A combinatorial optimization approach for diverse motif finding applications.Algorithms Mol Biol2006
15297295Comparative analysis of methods for representing and searching for transcription factor binding sites.Bioinformatics2004
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Collaborators

Stuart C Sealfon
Icahn School of Medicine at Mount Sinai
Co-authored papers 32
Olga G Troyanskaya
Lewis-Sigler Institute for Integrative Genomics, Princeton University
Co-authored papers 13
Boris M Hartmann
Institute of Veterinary Disease Control
Co-authored papers 10
Maria Chikina
University of Pittsburgh
Co-authored papers 7
Nadejda M Tsankova
Co-authored papers 5
Randy A Albrecht
Icahn School of Medicine at Mount Sinai
Co-authored papers 4
Adolfo Garc??a-Sastre
Icahn School of Medicine at Mount Sinai
Co-authored papers 4
Robert Sebra
Icahn School of Medicine at Mount Sinai
Co-authored papers 4
Martin J Walsh
Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai
Co-authored papers 3
Aaron K Wong
Flatiron Institute, Simons Foundation
Co-authored papers 3
Christopher Y Park
NYU Robert I. Grossman School of Medicine
Co-authored papers 2
Pei-Yong Shi
University of Texas Medical Branch
Co-authored papers 2
Ephraim L Tsalik
Duke University School of Medicine
Co-authored papers 2
Guillaume B E Stewart-Jones
Co-authored papers 2
Yan Jiang
Co-authored papers 2
Dalila Pinto
Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Kristin G Beaumont
Co-authored papers 2
James G Wetmur
Co-authored papers 2
Schahram Akbarian
Co-authored papers 2
Ana Fernandez-Sesma
Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Natalie Sauerwald
Center for Computational Biology, Flatiron Institute
Co-authored papers 2
Carles Mart??nez-Romero
Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Arjun Krishnan
Michigan State University
Co-authored papers 1
Miriam Merad
The Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai
Co-authored papers 1
Ren?? A Zelaya
Geisel School of Medicine at Dartmouth
Co-authored papers 1
Chad L Myers
University of Minnesota - Twin Cities
Co-authored papers 1
Harm van Bakel
Icahn School of Medicine at Mount Sinai
Co-authored papers 1
Sacha Gnjatic
The Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai
Co-authored papers 1
Casey S Greene
Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine
Co-authored papers 1
Ran Zhang
University of Wisconsin School of Medicine and Public Health
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Release 1.2