|
| 36828587 | The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond. | Genome Res | 2023 |
| 37609440 | THAPBI PICT-a fast, cautious, and accurate metabarcoding analysis pipeline. | PeerJ | 2023 |
| 35448560 | DNA Metabarcoding and Isolation by Baiting Complement Each Other in Revealing <i>Phytophthora</i> Diversity in Anthropized and Natural Ecosystems. | J Fungi (Basel) | 2022 |
| 34721839 | BOSC 2021, the 22nd Annual Bioinformatics Open Source Conference. | F1000Res | 2021 |
| 33260722 | The Genomic Impact of Selection for Virulence against Resistance in the Potato Cyst Nematode, <i>Globodera pallida</i>. | Genes (Basel) | 2020 |
| 32063916 | Parallel Microbial Ecology of <i>Pasteuria</i> and Nematode Species in Scottish Soils. | Front Plant Sci | 2020 |
| 30676315 | Kodoja: A workflow for virus detection in plants using k-mer analysis of RNA-sequencing data. | J Gen Virol | 2019 |
| 32025286 | BOSC 2019, the 20th annual Bioinformatics Open Source Conference. | F1000Res | 2019 |
| 29781797 | From plants to nematodes: Serratia grimesii BXF1 genome reveals an adaptation to the modulation of multi-species interactions. | Microb Genom | 2018 |
| 30165560 | Shared Transcriptional Control and Disparate Gain and Loss of Aphid Parasitism Genes. | Genome Biol Evol | 2018 |
| 30210780 | The 2018 Bioinformatics Open Source Conference (GCCBOSC 2018). | F1000Res | 2018 |
| 29118973 | The 2017 Bioinformatics Open Source Conference (BOSC). | F1000Res | 2017 |
| 25981957 | Identification and characterization of parasitism genes from the pinewood nematode Bursaphelenchus xylophilus reveals a multilayered detoxification strategy. | Mol Plant Pathol | 2016 |
| 27781083 | The 2016 Bioinformatics Open Source Conference (BOSC). | F1000Res | 2016 |
| 27296299 | FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation. | J Biomed Semantics | 2016 |
| 27286965 | The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence. | Genome Biol | 2016 |
| 27461253 | Evidence for an Opportunistic and Endophytic Lifestyle of the Bursaphelenchus xylophilus-Associated Bacteria Serratia marcescens PWN146 Isolated from Wilting Pinus pinaster. | Microb Ecol | 2016 |
| 26914653 | The 2015 Bioinformatics Open Source Conference (BOSC 2015). | PLoS Comput Biol | 2016 |
| 26935069 | Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets. | BMC Genomics | 2016 |
| 27108223 | The genome and genetics of a high oxidative stress tolerant Serratia sp. LCN16 isolated from the plant parasitic nematode Bursaphelenchus xylophilus. | BMC Genomics | 2016 |
| 26870612 | Gene expression changes in diapause or quiescent potato cyst nematode, Globodera pallida, eggs after hydration or exposure to tomato root diffusate. | PeerJ | 2016 |
| 25024288 | The Bioinformatics Open Source Conference (BOSC) 2013. | Bioinformatics | 2015 |
| 26358478 | Newly identified RNAs of raspberry leaf blotch virus encoding a related group of proteins. | J Gen Virol | 2015 |
| 26607216 | A metagenetic approach to determine the diversity and distribution of cyst nematodes at the level of the country, the field and the individual. | Mol Ecol | 2015 |
| 26336600 | NCBI BLAST+ integrated into Galaxy. | Gigascience | 2015 |
| 25841004 | Distinct circular single-stranded DNA viruses exist in different soil types. | Appl Environ Microbiol | 2015 |
| 24495517 | BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. | J Biomed Semantics | 2014 |
| 25472764 | Community-driven development for computational biology at Sprints, Hackathons and Codefests. | BMC Bioinformatics | 2014 |
| 25342461 | Genomic characterisation of the effector complement of the potato cyst nematode Globodera pallida. | BMC Genomics | 2014 |
| 25123114 | The transcriptome of Nacobbus aberrans reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes. | Genome Biol Evol | 2014 |
| 24580726 | The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode. | Genome Biol | 2014 |
| 24643548 | Galaxy as a platform for identifying candidate pathogen effectors. | Methods Mol Biol | 2014 |
| 22445902 | Using Tablet for visual exploration of second-generation sequencing data. | Brief Bioinform | 2013 |
| 24109552 | Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology. | PeerJ | 2013 |
| 23937694 | Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB-LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations. | Plant J | 2013 |
| 23398680 | The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies. | J Biomed Semantics | 2013 |
| 23253858 | Activation of hatching in diapaused and quiescent Globodera pallida. | Parasitology | 2013 |
| 21936662 | Genome-wide identification of genes regulated by the Rcs phosphorelay system in Erwinia amylovora. | Mol Plant Microbe Interact | 2012 |
| 22863280 | Comparison of transcript profiles in different life stages of the nematode Globodera pallida under different host potato genotypes. | Mol Plant Pathol | 2012 |
| 22909249 | Bio.Phylo: a unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython. | BMC Bioinformatics | 2012 |
| 22815791 | Novel bacteriophages containing a genome of another bacteriophage within their genomes. | PLoS One | 2012 |
| 22336098 | Identification and localisation of the NB-LRR gene family within the potato genome. | BMC Genomics | 2012 |
| 22049090 | Raspberry leaf blotch virus, a putative new member of the genus Emaravirus, encodes a novel genomic RNA. | J Gen Virol | 2012 |
| 21831138 | Genetic characterization of the HrpL regulon of the fire blight pathogen Erwinia amylovora reveals novel virulence factors. | Mol Plant Pathol | 2012 |
| 21909270 | Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus. | PLoS Pathog | 2011 |
| 20015970 | The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. | Nucleic Acids Res | 2010 |
| 20008458 | Evolution of relative reading frame bias in unidirectional prokaryotic gene overlaps. | Mol Biol Evol | 2010 |
| 19304878 | Biopython: freely available Python tools for computational molecular biology and bioinformatics. | Bioinformatics | 2009 |
| 19849787 | Identification and functional characterization of effectors in expressed sequence tags from various life cycle stages of the potato cyst nematode Globodera pallida. | Mol Plant Pathol | 2009 |
| 19241119 | Evolution of prokaryotic two-component systems: insights from comparative genomics. | Amino Acids | 2009 |