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Author Details

Seung Y Rhee
Carnegie Institution for Science
1992
105
46
PMIDPaper TitleJournal TitlePublished Year
36879427Plants use molecular mechanisms mediated by biomolecular condensates to integrate environmental cues with development.Plant Cell2023
36963384ARSK1 activates TORC1 signaling to adjust growth to phosphate availability in Arabidopsis.Curr Biol2023
37426891Status of genome function annotation in model organisms and crops.Plant Direct2023
36789161Evaluating Plant Drought Resistance with a Raspberry Pi and Time-lapse Photography.Bio Protoc2023
36750393Interpreting omics data with pathway enrichment analysis.Trends Genet2023
34848140Mineral nutrient signaling controls photosynthesis: focus on iron deficiency-induced chlorosis.Trends Plant Sci2022
35774620First Plant Cell Atlas symposium report.Plant Direct2022
35574989CHIQUITA1 maintains the temporal transition between proliferation and differentiation in Arabidopsis thaliana.Development2022
35512431Omics-guided metabolic pathway discovery in plants: Resources, approaches, and opportunities.Curr Opin Plant Biol2022
36053183Uncoupling differential water usage from drought resistance in a dwarf Arabidopsis mutant.Plant Physiol2022
34935969The Plant Cell Atlas: focusing new technologies on the kingdom that nourishes the planet.Plant Physiol2022
34644381Progress and challenges in sorghum biotechnology, a multipurpose feedstock for the bioeconomy.J Exp Bot2022
34233164A prion-like protein regulator of seed germination undergoes hydration-dependent phase separation.Cell2021
33686081Author Correction: Genome-enabled discovery of anthraquinone biosynthesis in Senna tora.Nat Commun2021
33712738Nanotechnology to advance CRISPR-Cas genetic engineering of plants.Nat Nanotechnol2021
34977672Live imaging <i>Arabidopsis thaliana</i> embryos under different hydration conditions.STAR Protoc2021
34893639Interdependent iron and phosphorus availability controls photosynthesis through retrograde signaling.Nat Commun2021
34523419A novel bivalent chromatin associates with rapid induction of camalexin biosynthesis genes in response to a pathogen signal in <i>Arabidopsis</i>.Elife2021
34491200Vision, challenges and opportunities for a Plant Cell Atlas.Elife2021
34403192Plant Metabolic Network 15: A resource of genome-wide metabolism databases for 126 plants and algae.J Integr Plant Biol2021
34507887Recognizing pioneering Black plant scientists in our schools and society.Trends Plant Sci2021
34385583Plant single-cell solutions for energy and the environment.Commun Biol2021
32430305QTG-Finder2: A Generalized Machine-Learning Algorithm for Prioritizing QTL Causal Genes in Plants.G3 (Bethesda)2020
33083684First plant cell atlas workshop report.Plant Direct2020
33208749Genome-enabled discovery of anthraquinone biosynthesis in Senna tora.Nat Commun2020
30657869METACLUSTER-an R package for context-specific expression analysis of metabolic gene clusters.Bioinformatics2019
31693663Systems genomics approaches provide new insights into Arabidopsis thaliana root growth regulation under combinatorial mineral nutrient limitation.PLoS Genet2019
31358562QTG-Finder: A Machine-Learning Based Algorithm To Prioritize Causal Genes of Quantitative Trait Loci in Arabidopsis and Rice.G3 (Bethesda)2019
30777643Towards Building a Plant Cell Atlas.Trends Plant Sci2019
28398567Bioinformatics tools for the identification of gene clusters that biosynthesize specialized metabolites.Brief Bioinform2018
27641093Computational inference of gene regulatory networks: Approaches, limitations and opportunities.Biochim Biophys Acta Gene Regul Mech2017
28228535Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants.Plant Physiol2017
28145456Enhancing gene regulatory network inference through data integration with markov random fields.Sci Rep2017
29208732The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology.Plant Physiol2017
28651538Systematic discovery of novel eukaryotic transcriptional regulators using sequence homology independent prediction.BMC Genomics2017
26754022A glimpse into the future of genome-enabled plant biology from the shores of Cold Spring Harbor.Genome Biol2016
27899149The quality of metabolic pathway resources depends on initial enzymatic function assignments: a case for maize.BMC Syst Biol2016
27717919iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases.Mol Plant2016
27557768A Framework for Discovering, Designing, and Testing MicroProteins to Regulate Synthetic Transcriptional Modules.Methods Mol Biol2016
25716164Genetic basis and detection of unintended effects in genetically modified crop plants.Transgenic Res2015
26530422Target Enrichment Improves Mapping of Complex Traits by Deep Sequencing.G3 (Bethesda)2015
26060811microProtein Prediction Program (miP3): A Software for Predicting microProteins and Their Target Transcription Factors.Int J Genomics2015
25886899Measuring semantic similarities by combining gene ontology annotations and gene co-function networks.BMC Bioinformatics2015
25670818Patterns of metabolite changes identified from large-scale gene perturbations in Arabidopsis using a genome-scale metabolic network.Plant Physiol2015
24231067Towards revealing the functions of all genes in plants.Trends Plant Sci2014
25213119Becoming data-savvy in a big-data world.Trends Plant Sci2014
24833385Border control--a membrane-linked interactome of Arabidopsis.Science2014
24786077Genomic signatures of specialized metabolism in plants.Science2014
24616380A comprehensive analysis of microProteins reveals their potentially widespread mechanism of transcriptional regulation.Plant Physiol2014
24630074Interview with Seung Yon Rhee.Trends Plant Sci2014
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Collaborators

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Co-authored papers 11
Boyce Thompson Institute (BTI)
Co-authored papers 10
Pangea Systems Inc., USA and Marine Biological Laboratory
Co-authored papers 6
University of Missouri
Co-authored papers 6
Carnegie Institution for Science
Co-authored papers 6
Carnegie Institution for Science
Co-authored papers 6
Oregon State University
Co-authored papers 5
USDA ARS NAA Robert W. Holley Center for Agriculture and Health
Co-authored papers 5
Samuel Roberts Noble Foundation
Co-authored papers 4
Ontario Institute for Cancer Research, University Avenue
Co-authored papers 4
Institute for Biomedical Informatics, University of Pennsylvania
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Stanford University
Co-authored papers 4
Stanford University
Co-authored papers 3
University of California davis
Co-authored papers 3
University of Cambridge
Co-authored papers 2
The Broad Institute of Harvard and MIT
Co-authored papers 2
Lewis-Sigler Institute for Integrative Genomics, Princeton University
Co-authored papers 2
Inc., Frederick National Laboratory for Cancer Research
Co-authored papers 2
The Scripps Research Institute
Co-authored papers 2
Co-authored papers 2
University of Texas
Co-authored papers 2
Carnegie Institution for Science
Co-authored papers 2
University of Cambridge
Co-authored papers 2
Center for Genetic Medicine, Northwestern University.
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USDA, Crop Improvement Genetics Research Unit, Western Regional Research Center
Co-authored papers 1
Broad Institute of MIT and Harvard
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University of Naples Federico II
Co-authored papers 1
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University of Missouri School of Medicine
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Stanford University Medical School
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