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Author Details

Christopher Churas (CM4AI)
University of California San Diego
0000-0001-9998-705X
2002
24
18
Tools, software development
PMIDPaper TitleJournal TitlePublished Year
36653526Mapping the common gene networks that underlie related diseases.Nat Protoc2023
37220749A multi-scale map of protein assemblies in the DNA damage response.Cell Syst2023
33413539HiDeF: identifying persistent structures in multiscale 'omics data.Genome Biol2021
33930332Functional landscape of SARS-CoV-2 cellular restriction.Mol Cell2021
34591613Interpretation of cancer mutations using a multiscale map of protein systems.Science2021
34556855Restriction factor compendium for influenza A virus reveals a mechanism for evasion of autophagy.Nat Microbiol2021
34570431NDEx: Accessing Network Models and Streamlining Network Biology Workflows.Curr Protoc2021
32587977Identifying persistent structures in multiscale 'omics data.bioRxiv2020
33095781Multiscale community detection in Cytoscape.PLoS Comput Biol2020
31257108Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking.Structure2019
30171236CDeep3M-Plug-and-Play cloud-based deep learning for image segmentation.Nat Methods2018
28957496Probability Map Viewer: near real-time probability map generator of serial block electron microscopy collections.Bioinformatics2017
28392451Electron tomography simulator with realistic 3D phantom for evaluation of acquisition, alignment and reconstruction methods.J Struct Biol2017
20534489High-resolution human genome structure by single-molecule analysis.Proc Natl Acad Sci U S A2010
19468303Lineage-specific biology revealed by a finished genome assembly of the mouse.PLoS Biol2009
19936062A single molecule scaffold for the maize genome.PLoS Genet2009
18667073Optical mapping discerns genome wide DNA methylation profiles.BMC Mol Biol2008
17697381Validation of rice genome sequence by optical mapping.BMC Genomics2007
16151144Whole-genome shotgun optical mapping of Rhodospirillum rubrum.Appl Environ Microbiol2005
15516592Single-molecule approach to bacterial genomic comparisons via optical mapping.J Bacteriol2004
15500921Shotgun optical mapping of the entire Leishmania major Friedlin genome.Mol Biochem Parasitol2004
15362885A microfluidic system for large DNA molecule arrays.Anal Chem2004
12952882Whole-genome shotgun optical mapping of Rhodobacter sphaeroides strain 2.4.1 and its use for whole-genome shotgun sequence assembly.Genome Res2003
12450857A whole-genome shotgun optical map of Yersinia pestis strain KIM.Appl Environ Microbiol2002
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Collaborators

David C Schwartz
University of Wisconsin-Madison
Co-authored papers 11
Dan Forrest
Co-authored papers 11
Rod Runnheim
Co-authored papers 10
Shiguo Zhou
Sage Science Inc.
Co-authored papers 10
Dexter Pratt (CM4AI)
UC San Diego
Co-authored papers 9
Trey Ideker (CM4AI)
University of California San Diego
Co-authored papers 8
Steve Goldstein
University of Wisconsin-Madison
Co-authored papers 7
Fan Zheng
University of California San Diego
Co-authored papers 6
Michael Bechner
University of Wisconsin-Madison
Co-authored papers 5
Michael Place
Center for Genomic Science Innovation, University of Wisconsin-Madison
Co-authored papers 4
Andrew Kile
Co-authored papers 4
Konstantinos Potamousis
University of Wisconsin-Madison
Co-authored papers 4
Jessica Severin
Center for Integrative Medical Sciences
Co-authored papers 4
Erika Kvikstad
University of Oxford
Co-authored papers 4
Casey Lamers
Co-authored papers 4
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 3
Keiichiro Ono
university of california san diego
Co-authored papers 3
Rudolf T Pillich
University of California San Diego
Co-authored papers 3
Mark H Ellisman
National Center for Microscopy and Imaging Research, University of California
Co-authored papers 3
Eileen T Dimalanta
New England Biolabs Inc.
Co-authored papers 3
Miron Livny
Morgridge Institute for Research
Co-authored papers 3
Sara Brin Rosenthal
Center for Computational Biology and Bioinformatics, University of California
Co-authored papers 3
Alex Lim
University of Wisconsin-Madison
Co-authored papers 3
Evan E Eichler
University of Washington
Co-authored papers 2
Jisoo Park
University of California San Diego san francisco
Co-authored papers 2
Brian Teague
Massachusetts Institute of Technology
Co-authored papers 2
Michael S Waterman
Biocomplexity Institute and Initiative
Co-authored papers 2
Sebastien Phan
University of California San Diego
Co-authored papers 2
Paul D De Jesus
Sanford Burnham Prebys Medical Discovery Institute
Co-authored papers 2
Laura Martin-Sancho
The Scripps Research Institute
Co-authored papers 2
Release 1.2