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Author Details

Allison A Johnson
Center for Biological Data Science, Virginia Commonwealth University
1998
36
19
PMIDPaper TitleJournal TitlePublished Year
36851489Evidence of a Set of Core-Function Genes in 16 Bacillus Podoviral Genomes with Considerable Genomic Diversity.Viruses2023
34456300Effects of Device Limitations on Acquisition of the /t/-/k/ Contrast in Children With Cochlear Implants.Ear Hear2022
34978921Instructional Models for Course-Based Research Experience (CRE) Teaching.CBE Life Sci Educ2022
34410150Complete Genome Sequences of Bacillus cereus Group Phages AaronPhadgers, ALPS, Beyonphe, Bubs, KamFam, OmnioDeoPrimus, Phireball, PPIsBest, YungSlug, and Zainny.Microbiol Resour Announc2021
34710081Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO).PLoS Comput Biol2021
29748396Complete Genome Sequences of Bacillus Phages Janet and OTooleKemple52.Genome Announc2018
29883383Discovery and Biochemical Characterization of PlyP56, PlyN74, and PlyTB40-<i>Bacillus</i> Specific Endolysins.Viruses2018
30180689Quantifying robustness of the /t/-/k/ contrast using a single, static spectral feature.J Acoust Soc Am2018
28067906Prophage-mediated defence against viral attack and viral counter-defence.Nat Microbiol2017
28280018Complete Genome Sequences of <i>Bacillus</i> Phages DirtyBetty and Kida.Genome Announc2017
29184079Virus-host protein-protein interactions of mycobacteriophage Giles.Sci Rep2017
27417827Complete Genome Sequences of Nine Bacillus cereus Group Phages.Genome Announc2016
25986902The Protein Interactome of Mycobacteriophage Giles Predicts Functions for Unknown Proteins.J Bacteriol2015
24496795A broadly implementable research course in phage discovery and genomics for first-year undergraduate students.mBio2014
17189685Synthesis and HIV-1 integrase inhibitory activity of spiroundecane(ene) derivatives.Bioorg Med Chem Lett2007
17172465Probing HIV-1 integrase inhibitor binding sites with position-specific integrase-DNA cross-linking assays.Mol Pharmacol2007
16257967Integration requires a specific interaction of the donor DNA terminal 5'-cytosine with glutamine 148 of the HIV-1 integrase flexible loop.J Biol Chem2006
20431697Mechanisms and inhibition of HIV integration.Drug Discov Today Dis Mech2006
19372837Integration of human immunodeficiency virus as a target for antiretroviral therapy.Curr Opin HIV AIDS2006
16998183Covalent binding of the natural antimicrobial peptide indolicidin to DNA abasic sites.Nucleic Acids Res2006
16737818Regiocontrolled synthesis and HIV inhibitory activity of unsymmetrical binaphthoquinone and trimeric naphthoquinone derivatives of conocurvone.Bioorg Med Chem2006
16943199Effect of DNA modifications on DNA processing by HIV-1 integrase and inhibitor binding: role of DNA backbone flexibility and an open catalytic site.J Biol Chem2006
16418335Preferential inhibition of the magnesium-dependent strand transfer reaction of HIV-1 integrase by alpha-hydroxytropolones.Mol Pharmacol2006
15729361Integrase inhibitors to treat HIV/AIDS.Nat Rev Drug Discov2005
14627697Position-specific suppression and enhancement of HIV-1 integrase reactions by minor groove benzo[a]pyrene diol epoxide deoxyguanine adducts: implications for molecular interactions between integrase and substrates.J Biol Chem2004
15193139HIV-1 integrase inhibitors: a decade of research and two drugs in clinical trial.Curr Top Med Chem2004
15047533Relationship between antiviral activity and host toxicity: comparison of the incorporation efficiencies of 2',3'-dideoxy-5-fluoro-3'-thiacytidine-triphosphate analogs by human immunodeficiency virus type 1 reverse transcriptase and human mitochondrial DNA polymerase.Antimicrob Agents Chemother2004
12643946Azido-containing aryl beta-diketo acid HIV-1 integrase inhibitors.Bioorg Med Chem Lett2003
12920196Metal-dependent inhibition of HIV-1 integrase by beta-diketo acids and resistance of the soluble double-mutant (F185K/C280S).Mol Pharmacol2003
12057671Synthesis of substituted diarylmethylenepiperidines (DAMPs), a novel class of anti-HIV agents.Bioorg Med Chem2002
11477093Fidelity of nucleotide incorporation by human mitochondrial DNA polymerase.J Biol Chem2001
11328813Insights into the molecular mechanism of mitochondrial toxicity by AIDS drugs.J Biol Chem2001
11526116Toxicity of antiviral nucleoside analogs and the human mitochondrial DNA polymerase.J Biol Chem2001
11477094Exonuclease proofreading by human mitochondrial DNA polymerase.J Biol Chem2001
10677218Human mitochondrial DNA polymerase holoenzyme: reconstitution and characterization.Biochemistry2000
9558343Expression, purification, and initial kinetic characterization of the large subunit of the human mitochondrial DNA polymerase.Biochemistry1998
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Collaborators

Center for Cancer Research, National Cancer Institute
Co-authored papers 15
University of Pittsburgh
Co-authored papers 5
University of Pittsburgh
Co-authored papers 3
American Heart Association, American Society for Microbiology, International Society for Computational Biology, Lawrence Berkeley National Laboratory, University of California Los Angeles, University of Delaware, Virginia Commonwealth University
Co-authored papers 2
University of Oklahoma
Co-authored papers 2
Center for the Study of Biological Complexity, Virginia Commonwealth University
Co-authored papers 2
University of Maryland
Co-authored papers 2
University of Arizona
Co-authored papers 1
College of Charleston
Co-authored papers 1
Center for the Study of Biological Complexity, Virginia Commonwealth University
Co-authored papers 1
Center for the Study of Biological Complexity, Virginia Commonwealth University
Co-authored papers 1
Lawrence Berkeley National Laboratory
Co-authored papers 1
Texas A&M University, College Station
Co-authored papers 1
Co-authored papers 1
Co-authored papers 1
Texas A&M University, College Station
Co-authored papers 1
Texas A&M University, College Station
Co-authored papers 1
Co-authored papers 1
Iowa State University
Co-authored papers 1
Carnegie Institution for Science
Co-authored papers 1
Johns Hopkins University
Co-authored papers 1
University of California berkeley
Co-authored papers 1
Texas A&M University and Texas Agrilife Research, College Station
Co-authored papers 1
Ann & Robert H. Lurie Children's Hospital of Chicago
Co-authored papers 1
Center for the Study of Biological Complexity, Virginia Commonwealth University
Co-authored papers 1
Center for Phage Technology, Texas A&M University, College Station
Co-authored papers 1
Qilu University of Technology (Shandong Academy of Sciences)
Co-authored papers 1
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University College London, Institute for Cardiovascular Science
Co-authored papers 1
Leuven Plant Institute
Co-authored papers 1