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Author Details

John Moult
Institute for Bioscience and Biotechnology Research
1970
167
58
Andrej Sali (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
37399411More than just pattern recognition: Prediction of uncommon protein structure features by AI methods.Proc Natl Acad Sci U S A2023
37872703Breaking the conformational ensemble barrier: Ensemble structure modeling challenges in CASP15.Proteins2023
37920879Critical assessment of methods of protein structure prediction (CASP)-Round XV.Proteins2023
37493353Protein target highlights in CASP15: Analysis of models by structure providers.Proteins2023
37466021RNA target highlights in CASP15: Evaluation of predicted models by structure providers.Proteins2023
37306011New prediction categories in CASP15.Proteins2023
36147680Antibody interfaces revealed through structural mining.Comput Struct Biotechnol J2022
35783295CACHE (Critical Assessment of Computational Hit-finding Experiments): A public-private partnership benchmarking initiative to enable the development of computational methods for hit-finding.Nat Rev Chem2022
34117883MecCog: a knowledge representation framework for genetic disease mechanism.Bioinformatics2021
34462960Modeling SARS-CoV-2 proteins in the CASP-commons experiment.Proteins2021
34561912Target highlights in CASP14: Analysis of models by structure providers.Proteins2021
34533838Critical assessment of methods of protein structure prediction (CASP)-Round XIV.Proteins2021
31680375Matching whole genomes to rare genetic disorders: Identification of potential causative variants using phenotype-weighted knowledge in the CAGI SickKids5 clinical genomes challenge.Hum Mutat2020
30393374Iatrogenic hypertension: a bioinformatic analysis.Pharmacogenomics J2019
31589781Critical assessment of methods of protein structure prediction (CASP)-Round XIII.Proteins2019
31442339Target highlights in CASP13: Experimental target structures through the eyes of their authors.Proteins2019
31301157Assessing computational predictions of the phenotypic effect of cystathionine-beta-synthase variants.Hum Mutat2019
31184403Assessment of methods for predicting the effects of PTEN and TPMT protein variants.Hum Mutat2019
31260570Performance of computational methods for the evaluation of pericentriolar material 1 missense variants in CAGI-5.Hum Mutat2019
31342580Assessment of predicted enzymatic activity of α-N-acetylglucosaminidase variants of unknown significance for CAGI 2016.Hum Mutat2019
31334884Reports from the fifth edition of CAGI: The Critical Assessment of Genome Interpretation.Hum Mutat2019
31144778Assessment of patient clinical descriptions and pathogenic variants from gene panel sequences in the CAGI-5 intellectual disability challenge.Hum Mutat2019
31140652Predicting venous thromboembolism risk from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges.Hum Mutat2019
29159950Evaluation of the template-based modeling in CASP12.Proteins2018
30586388Harnessing formal concepts of biological mechanism to analyze human disease.PLoS Comput Biol2018
29369145A system view and analysis of essential hypertension.J Hypertens2018
29082672Critical assessment of methods of protein structure prediction (CASP)-Round XII.Proteins2018
28960539Target highlights from the first post-PSI CASP experiment (CASP12, May-August 2016).Proteins2018
29067782A tribute to Anna Tramontano (1957-2017).Proteins2018
28544272Ensemble variant interpretation methods to predict enzyme activity and assign pathogenicity in the CAGI4 NAGLU (Human N-acetyl-glucosaminidase) and UBE2I (Human SUMO-ligase) challenges.Hum Mutat2017
28440912Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI.Hum Mutat2017
28497567Determination of disease phenotypes and pathogenic variants from exome sequence data in the CAGI 4 gene panel challenge.Hum Mutat2017
28397312Lessons from the CAGI-4 Hopkins clinical panel challenge.Hum Mutat2017
29254494Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework.Genome Med2017
28512778CAGI4 Crohn's exome challenge: Marker SNP versus exome variant models for assigning risk of Crohn disease.Hum Mutat2017
28512736CAGI4 SickKids clinical genomes challenge: A pipeline for identifying pathogenic variants.Hum Mutat2017
28882987Reply to HU et al.: On the interpretation of gasdermin-B expression quantitative trait loci data.Proc Natl Acad Sci U S A2017
28634997Working toward precision medicine: Predicting phenotypes from exomes in the Critical Assessment of Genome Interpretation (CAGI) challenges.Hum Mutat2017
28817245Reports from CAGI: The Critical Assessment of Genome Interpretation.Hum Mutat2017
28544481Matching phenotypes to whole genomes: Lessons learned from four iterations of the personal genome project community challenges.Hum Mutat2017
26978792A bacteriophage endolysin that eliminates intracellular streptococci.Elife2016
26473983Some of the most interesting CASP11 targets through the eyes of their authors.Proteins2016
27428252Consensus Genome-Wide Expression Quantitative Trait Loci and Their Relationship with Human Complex Trait Disease.OMICS2016
27171127Critical assessment of methods of protein structure prediction: Progress and new directions in round XI.Proteins2016
25740429Increasing the stability of the bacteriophage endolysin PlyC using rationale-based FoldX computational modeling.Protein Eng Des Sel2015
26110739Insights from GWAS: emerging landscape of mechanisms underlying complex trait disease.BMC Genomics2015
25937569Genetic Basis of Common Human Disease: Insight into the Role of Missense SNPs from Genome-Wide Association Studies.J Mol Biol2015
23946100Assessment of protein disorder region predictions in CASP10.Proteins2014
25057111GWAS and drug targets.BMC Genomics2014
24344053Critical assessment of methods of protein structure prediction (CASP)--round x.Proteins2014
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Collaborators

Krzysztof Fidelis
University of California davis
Co-authored papers 43
Andriy Kryshtafovych
University of California davis
Co-authored papers 31
Torsten Schwede
University of Basel
Co-authored papers 19
Anna Tramontano
Sapienza University of Rome
Co-authored papers 12
Steven E Brenner
University of California berkeley
Co-authored papers 11
Rita Casadio
Department of Pharmacy and Biotechnology, University of Bologna
Co-authored papers 7
Tim Hubbard
Co-authored papers 7
Silvio C E Tosatto
University of Padova
Co-authored papers 7
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Rutgers University
Co-authored papers 7
Ceslovas Venclovas
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Department of Pharmacy and Biotechnology, University of Bologna
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Baylor College of Medicine
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Leibniz-Institut fur Virologie (LIV)
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Indiana University
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University of Washington
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Hematology and Clinical Immunology Unit, University of Padova
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Jacobs School of Medicine and Biomedical Sciences, University at Buffalo
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Carlo Ferrari
University of Padua
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Castrense Savojardo
Department of Pharmacy and Biotechnology, University of Bologna
Co-authored papers 5
Burkhard Rost
Technical University of Munich (TUM)
Co-authored papers 5
Joel L Sussman
Weizmann Institute of Science
Co-authored papers 4
Manuel Giollo
University of Padua
Co-authored papers 4
Vikas Pejaver
Institute for Genomic Health, Icahn School of Medicine at Mount Sinai
Co-authored papers 4
Rhiju Das
Stanford University School of Medicine
Co-authored papers 4
Roland L Dunbrack
Fox Chase Cancer Center
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Michael Braxenthaler
Physiologisch-chemisches Institut, University of Tubingen
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Gaetano T Montelione
Rensselaer Polytechnic Institute
Co-authored papers 4
Yaoqi Zhou
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Stephen K Burley
The State University of New Jersey
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Release 1.2