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Author Details

John P Barton
University of California riverside
1989
50
16
PMIDPaper TitleJournal TitlePublished Year
36932614Bézier interpolation improves the inference of dynamical models from data.Phys Rev E2023
37695895An inference model gives insights into innate immune adaptation and repertoire diversity.Proc Natl Acad Sci U S A2023
37391513Small RNA sequencing of field Culex mosquitoes identifies patterns of viral infection and the mosquito immune response.Sci Rep2023
36610715Estimating linkage disequilibrium and selection from allele frequency trajectories.Genetics2023
35076276Correction for Rando et al., "Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure".mSystems2022
36130322Inferring Epistasis from Genetic Time-series Data.Mol Biol Evol2022
33257862MPL resolves genetic linkage in fitness inference from complex evolutionary histories.Nat Biotechnol2021
33514660Adenovirus-vectored vaccine containing multidimensionally conserved parts of the HIV proteome is immunogenic in rhesus macaques.Proc Natl Acad Sci U S A2021
32956362Cross-serotypically conserved epitope recommendations for a universal T cell-based dengue vaccine.PLoS Negl Trop Dis2020
31953427Deconvolving mutational patterns of poliovirus outbreaks reveals its intrinsic fitness landscape.Nat Commun2020
32069678Inference of compressed Potts graphical models.Phys Rev E2020
31851308MPF-BML: a standalone GUI-based package for maximum entropy model inference.Bioinformatics2020
33085662Predominance of positive epistasis among drug resistance-associated mutations in HIV-1 protease.PLoS Genet2020
30700598Characterization of Intact Proviruses in Blood and Lymph Node from HIV-Infected Individuals Undergoing Analytical Treatment Interruption.J Virol2019
31392033Modelling and <i>in vitro</i> testing of the HIV-1 Nef fitness landscape.Virus Evol2019
29311326Fitness landscape of the human immunodeficiency virus envelope protein that is targeted by antibodies.Proc Natl Acad Sci U S A2018
30072495Relationship between latent and rebound viruses in a clinical trial of anti-HIV-1 antibody 3BNC117.J Exp Med2018
30420517Relationship between intact HIV-1 proviruses in circulating CD4<sup>+</sup> T cells and rebound viruses emerging during treatment interruption.Proc Natl Acad Sci U S A2018
29442996Role of framework mutations and antibody flexibility in the evolution of broadly neutralizing antibodies.Elife2018
28059778Rational design of vaccine targets and strategies for HIV: a crossroad of statistical physics, biology, and medicine.Rep Prog Phys2017
28686159Deconstruction of the Ras switching cycle through saturation mutagenesis.Elife2017
26986367Identification of drug resistance mutations in HIV from constraints on natural evolution.Phys Rev E2016
27872306Paired quantitative and qualitative assessment of the replication-competent HIV-1 reservoir and comparison with integrated proviral DNA.Proc Natl Acad Sci U S A2016
27329863ACE: adaptive cluster expansion for maximum entropy graphical model inference.Bioinformatics2016
27212475Relative rate and location of intra-host HIV evolution to evade cellular immunity are predictable.Nat Commun2016
25646424Scaling laws describe memories of host-pathogen riposte in the HIV population.Proc Natl Acad Sci U S A2015
25102049The fitness landscape of HIV-1 gag: advanced modeling approaches and validation of model predictions by in vitro testing.PLoS Comput Biol2014
25122276Large pseudocounts and L2-norm penalties are necessary for the mean-field inference of Ising and Potts models.Phys Rev E Stat Nonlin Soft Matter Phys2014
23528097The energy costs of insulators in biochemical networks.Biophys J2013
24483484Spin models inferred from patient-derived viral sequence data faithfully describe HIV fitness landscapes.Phys Rev E Stat Nonlin Soft Matter Phys2013
20962947Actual focal length of a symmetric biconvex microlens and its application in determining the transmitted beam waist position.Appl Opt2010
17384721Electromagnetic field for a tightly focused beam incident upon ordinary and layered plane surfaces.Appl Opt2007
15898558Electromagnetic field for a focused light sheet incident on a plane surface.J Opt Soc Am A Opt Image Sci Vis2005
12656356Near-field calculations for a rigid spheroid with an arbitrary incident acoustic field.J Acoust Soc Am2003
12469737Electromagnetic field calculations for an irregularly shaped, near-spheroidal particle with arbitrary illumination.J Opt Soc Am A Opt Image Sci Vis2002
18360389Internal, near-surface, and scattered electromagnetic fields for a layered spheroid with arbitrary illumination.Appl Opt2001
10708026Electromagnetic fields for a spheroidal particle with an arbitrary embedded source.J Opt Soc Am A Opt Image Sci Vis2000
18091956Excitation localization principle for spherical microcavities.Opt Lett1998
18273293Electromagnetic field calculations for a sphere illuminated by a higher-order Gaussian beam. II. Far-field scattering.Appl Opt1998
18250804Electromagnetic-field calculations for a sphere illuminated by a higher-order Gaussian beam. I. Internal and near-field effects.Appl Opt1997
18250805Electromagnetic-field calculations for irregularly shaped, layered cylindrical particles with focused illumination.Appl Opt1997
21069037Electromagnetic-field calculations for irregularly shaped, axisymmetric layered particles with focused illumination.Appl Opt1996
21060377Internal and near-surface electromagnetic fields for a spheroidal particle with arbitrary illumination.Appl Opt1995
21068967Internal and near-surface electromagnetic fields for an absorbing spheroidal particle with arbitrary illumination.Appl Opt1995
20862039Theoretical analysis of the effects of particle trajectory and structural resonances on the performance of a phase-Doppler particle analyzer.Appl Opt1994
20717273Electromagnetic field for a beam incident on two adjacent spherical particles.Appl Opt1991
20700304Nonlinear interaction of KrF laser radiation with small water droplets.Appl Opt1991
20717280Theoretical model of the laser imaging of small aerosols: applications to aerosol sizing.Appl Opt1991
19752892Scattering of incident KrF laser radiation resulting from the laser-induced breakdown of H(2)O droplets.Opt Lett1989
20548723Focused laser beam interactions with methanol droplets: effects of relative beam diameter.Appl Opt1989
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Collaborators

The Rockefeller University
Co-authored papers 4
Ragon Institute of Mass General
Co-authored papers 2
Co-authored papers 2
Co-authored papers 2
Harvard School of Public Health
Co-authored papers 1
University of Southern California
Co-authored papers 1
Co-authored papers 1
University of Pennsylvania
Co-authored papers 1
Howard Hughes Medical Institute, University of California berkeley
Co-authored papers 1
Georgetown University Medical Center
Co-authored papers 1
School of Pharmaceutical Sciences, University of Sao Paulo
Co-authored papers 1
University of Pennsylvania
Co-authored papers 1
Co-authored papers 1
University of Pennsylvania School of Medicine
Co-authored papers 1
David Geffen School of Medicine, University of California los angeles
Co-authored papers 1
University of Pennsylvania
Co-authored papers 1
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 1
University of California los angeles
Co-authored papers 1
Institute for Immunology, University of Pennsylvania Perelman School of Medicine
Co-authored papers 1
Co-authored papers 1
Lund University
Co-authored papers 1
Co-authored papers 1
University of Wisconsin-Madison
Co-authored papers 1
German Center for Neurodegenerative Diseases
Co-authored papers 1
University of Michigan School of Medicine ann arbor
Co-authored papers 1
Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine
Co-authored papers 1
Institute for Health Research and Policy, University of Illinois Chicago
Co-authored papers 1
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 1
Perelman School of Medicine, University of Pennsylvania
Co-authored papers 1
Xiangya Hospital of Central South University
Co-authored papers 1