Author details

Full Name

Brian A Williams

Affiliation

ORCID

Career Start Year

1994

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37546854	Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.	bioRxiv	2023
37292896	The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity.	bioRxiv	2023
35474001	Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes.	Nature	2022
33398137	Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.	Nature	2021
32728242	Spatiotemporal DNA methylome dynamics of the developing mouse fetus.	Nature	2020
33037424	Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.	Nature	2020
32728249	Expanded encyclopaedias of DNA elements in the human and mouse genomes.	Nature	2020
32728245	The changing mouse embryo transcriptome at whole tissue and single-cell resolution.	Nature	2020
31629685	Single-Cell Analysis Reveals Regulatory Gene Expression Dynamics Leading to Lineage Commitment in Early T Cell Development.	Cell Syst	2019
31645363	Dynamics of microRNA expression during mouse prenatal development.	Genome Res	2019
29531064	Reconstructing a metazoan genetic pathway with transcriptome-wide epistasis measurements.	Proc Natl Acad Sci U S A	2018
30171019	Pioneering, chromatin remodeling, and epigenetic constraint in early T-cell gene regulation by SPI1 (PU.1).	Genome Res	2018
28130268	A Comparison of Internal Dispositions and Career Trajectories after Collaborative versus Apprenticed Research Experiences for Undergraduates.	CBE Life Sciences Education	2017
26392177	Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks.	Genome Biol	2015
25575081	Single-cell transcriptome analysis reveals dynamic changes in lncRNA expression during reprogramming.	Cell Stem Cell	2015
24299736	From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing.	Genome Res	2014
25411051	A ratiometric-based measure of gene co-expression.	BMC Bioinformatics	2014
25409824	A comparative encyclopedia of DNA elements in the mouse genome.	Nature	2014
23325432	Dynamic DNA methylation across diverse human cell lines and tissues.	Genome Res	2013
23985341	The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus.	Genome Biol	2013
23939186	Transcriptional regulation by nicotine in dopaminergic neurons.	Biochem Pharmacol	2013
24282307	Characterization of the human ESC transcriptome by hybrid sequencing.	Proc Natl Acad Sci U S A	2013
23833213	The developmental transcriptome of the mosquito Aedes aegypti, an invasive species and major arbovirus vector.	G3 (Bethesda)	2013
23110899	Mutation of Arabidopsis spliceosomal timekeeper locus1 causes circadian clock defects.	Plant Cell	2012
22889292	An encyclopedia of mouse DNA elements (Mouse ENCODE).	Genome Biol	2012
22300769	Effects of sequence variation on differential allelic transcription factor occupancy and gene expression.	Genome Res	2012
22500808	Dynamic transformations of genome-wide epigenetic marking and transcriptional control establish T cell identity.	Cell	2012
22466688	Microglia in the cerebral cortex in autism.	J Autism Dev Disord	2012
22730465	Transcription factor redundancy and tissue-specific regulation: evidence from functional and physical network connectivity.	Genome Res	2012
22955975	RNA editing in the human ENCODE RNA-seq data.	Genome Res	2012
22955620	Landscape of transcription in human cells.	Nature	2012
20436464	Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation.	Nat Biotechnol	2010
20980554	Scaffolding a Caenorhabditis nematode genome with RNA-seq.	Genome Res	2010
18516045	Mapping and quantifying mammalian transcriptomes by RNA-Seq.	Nat Methods	2008
16938555	Genomic DNA as a general cohybridization standard for ratiometric microarrays.	Methods Enzymol	2006
16639763	Enhanced signals and fast nucleic acid hybridization by microfluidic chaotic mixing.	Angew Chem Int Ed Engl	2006
15190126	Genomic DNA as a cohybridization standard for mammalian microarray measurements.	Nucleic Acids Res	2004
12235357	Significance and statistical errors in the analysis of DNA microarray data.	Proc Natl Acad Sci U S A	2002
10821752	Fate restriction in limb muscle precursor cells precedes high-level expression of MyoD family member genes.	Development (Cambridge)	2000
10635464	Determination and morphogenesis in myogenic progenitor cells: an experimental embryological approach.	Current Topics in Developmental Biology	2000
9670808	Knowing chops from chuck: roasting myoD redundancy.	BioEssays	1998
9362460	Emergence of determined myotome precursor cells in the somite.	Development (Cambridge)	1997
8722471	Manipulation of the avian segmental plate in vivo.	Methods in Cell Biology	1996
7600957	Pax-3 expression in segmental mesoderm marks early stages in myogenic cell specification.	Development (Cambridge)	1994