Author details

Full Name

Jishnu Das

Affiliation

ORCID

Career Start Year

2012

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37061918	Antibodies against the Ebola virus soluble glycoprotein are associated with long-term vaccine-mediated protection of non-human primates.	Cell Rep	2023
37478853	The gut protist Tritrichomonas arnold restrains virus-mediated loss of oral tolerance by modulating dietary antigen-presenting dendritic cells.	Immunity	2023
34879230	Upper and lower respiratory tract correlates of protection against respiratory syncytial virus following vaccination of nonhuman primates.	Cell Host Microbe	2022
35380990	Functional reprogramming of monocytes in patients with acute and convalescent severe COVID-19.	JCI insight	2022
35492246	A network-based approach to identify expression modules underlying rejection in pediatric liver transplantation.	Cell Rep Med	2022
35738278	Antibodies targeting conserved non-canonical antigens and endemic coronaviruses associate with favorable outcomes in severe COVID-19.	Cell Reports	2022
35618829	Autoreactive CD8 T cells are restrained by an exhaustion-like program that is maintained by LAG3.	Nature Immunology	2022
35607614	Essential Regression: A generalizable framework for inferring causal latent factors from multi-omic datasets.	Patterns (N Y)	2022
35316647	Fungal sensing enhances neutrophil metabolic fitness by regulating antifungal Glut1 activity.		2022
35132415	Mutability Patterns Across the Spike Glycoprotein Reveal the Diverging and Lineage-specific Evolutionary Space of SARS-CoV-2.		2022
34873589	People critically ill with COVID-19 exhibit peripheral immune profiles predictive of mortality and reflective of SARS-CoV-2 lung viral burden.	Cell Rep Med	2021
35590199	Delayed fractional dosing with RTS,S/AS01 improves humoral immunity to malaria via a balance of polyfunctional NANP6- and Pf16-specific antibodies.	Med	2021
33594364	Bifurcated monocyte states are predictive of mortality in severe COVID-19.	bioRxiv	2021
34366878	Mechanisms of Impaired Lung Development and Ciliation in Mannosidase-1-Alpha-2 (<i>Man1a2</i>) Mutants.	Front Physiol	2021
32718991	Mapping functional humoral correlates of protection against malaria challenge following RTS,S/AS01 vaccination.	Sci Transl Med	2020
32145259	Epigenetic basis for monocyte dysfunction in patients with severe alcoholic hepatitis.	Journal of Hepatology	2020
32196533	Latency reversal agents modulate HIV antigen processing and presentation to CD8 T cells.	PLoS Pathogens	2020
32060529	Antibody Fc Glycosylation Discriminates Between Latent and Active Tuberculosis.	Journal of Infectious Diseases	2020
32402293	Co-immunization of DNA and Protein in the Same Anatomical Sites Induces Superior Protective Immune Responses against SHIV Challenge.	Cell Reports	2020
33048992	Mining for humoral correlates of HIV control and latent reservoir size.	PLoS Pathog	2020
32622269	Glucosylation by the Legionella Effector SetA Promotes the Nuclear Localization of the Transcription Factor TFEB.	iScience	2020
32900843	Extracellular Matrix Injury of Kidney Allografts in Antibody-Mediated Rejection: A Proteomics Study.	J Am Soc Nephrol	2020
31515488	Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations.	Nat Commun	2019
30215689	Initiation of Antiretroviral Therapy Before Pregnancy Reduces the Risk of Infection-related Hospitalization in Human Immunodeficiency Virus-exposed Uninfected Infants Born in a High-income Country.	Clin Infect Dis	2019
30535371	Reply to Slogrove et al.	Clin Infect Dis	2019
31491384	Antibiotics-Driven Gut Microbiome Perturbation Alters Immunity to Vaccines in Humans.	Cell	2019
31415241	Effect of dietary fat and sucrose consumption on cardiac fibrosis in mice and rhesus monkeys.	JCI Insight	2019
30954780	Latent Model-Based Clustering for Biological Discovery.	iScience	2019
31204102	Fc Glycan-Mediated Regulation of Placental Antibody Transfer.	Cell	2019
29793957	Control of Heterologous Simian Immunodeficiency Virus SIV<sub>smE660</sub> Infection by DNA and Protein Coimmunization Regimens Combined with Different Toll-Like-Receptor-4-Based Adjuvants in Macaques.	J Virol	2018
30021899	Analysis of Complement-Mediated Lysis of Simian Immunodeficiency Virus (SIV) and SIV-Infected Cells Reveals Sex Differences in Vaccine-Induced Immune Responses in Rhesus Macaques.	Journal of Virology	2018
30092199	A Role for Fc Function in Therapeutic Monoclonal Antibody-Mediated Protection against Ebola Virus.	Cell Host Microbe	2018
30177821	Route of immunization defines multiple mechanisms of vaccine-mediated protection against SIV.	Nat Med	2018
29488879	The transcription factors Runx3 and ThPOK cross-regulate acquisition of cytotoxic function by human Th1 lymphocytes.	eLife	2018
29617873	A multi-landing pad DNA integration platform for mammalian cell engineering.	Nucleic Acids Res	2018
29239894	Temporal variation in HIV-specific IgG subclass antibodies during acute infection differentiates spontaneous controllers from chronic progressors.	AIDS	2018
26771498	A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human.	Cell	2016
26841357	mutation3D: Cancer Gene Prediction Through Atomic Clustering of Coding Variants in the Structural Proteome.	Hum Mutat	2016
27136240	Studying Autism in Context.	Cell Syst	2015
25887568	ENCAPP: elastic-net-based prognosis prediction and biomarker discovery for human cancers.	BMC Genomics	2015
25752575	Phosphoproteomics reveals distinct modes of Mec1/ATR signaling during DNA replication.	Mol Cell	2015
24599843	Elucidating common structural features of human pathogenic variations using large-scale atomic-resolution protein networks.	Hum Mutat	2014
25502805	A massively parallel pipeline to clone DNA variants and examine molecular phenotypes of human disease mutations.	PLoS Genet	2014
25392695	Predicting cancer prognosis using functional genomics data sets.	Cancer Inform	2014
24096645	Exploring mechanisms of human disease through structurally resolved protein interactome networks.	Mol Biosyst	2014
23695164	Cross-species protein interactome mapping reveals species-specific wiring of stress response pathways.	Sci Signal	2013
23791107	Dissecting disease inheritance modes in a three-dimensional protein network challenges the "guilt-by-association" principle.	Am J Hum Genet	2013
24092746	Integrative annotation of variants from 1092 humans: application to cancer genomics.	Science	2013
23599502	INstruct: a database of high-quality 3D structurally resolved protein interactome networks.	Bioinformatics	2013
22252508	Three-dimensional reconstruction of protein networks provides insight into human genetic disease.	Nat Biotechnol	2012