Author details

Full Name

Deborah A Hogan

Affiliation

Geisel School of Medicine at Dartmouth

ORCID

Career Start Year

1997

Papers

120

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
36661299	Community composition shapes microbial-specific phenotypes in a cystic fibrosis polymicrobial model system.	Elife	2023
37491532	Comparative effects of CFTR modulators on phagocytic, metabolic and inflammatory profiles of CF and nonCF macrophages.	Sci Rep	2023
37755174	Bacterial Outer Membrane Vesicles and Immune Modulation of the Host.	Membranes (Basel)	2023
37662412	Analysis of <i>Pseudomonas aeruginosa</i> transcription in an <i>ex vivo</i> cystic fibrosis sputum model identifies metal restriction as a gene expression stimulus.	bioRxiv	2023
37090636	How individual <i>P. aeruginosa</i> cells with diverse stator distributions collectively form a heterogeneous macroscopic swarming population.	bioRxiv	2023
37256658	An rRNA fragment in extracellular vesicles secreted by human airway epithelial cells increases the fluoroquinolone sensitivity of <i>P. aeruginosa</i>.	Am J Physiol Lung Cell Mol Physiol	2023
37432019	Mrs4 loss of function in fungi during adaptation to the cystic fibrosis lung.	mBio	2023
37398201	Citrate cross-feeding between <i>Pseudomonas aerguinosa</i> genotypes supports <i>lasR</i> mutant fitness.	bioRxiv	2023
37066389	Mrs4 loss of function in fungi during adaptation to the cystic fibrosis lung.	bioRxiv	2023
37398089	Citrate cross-feeding between <i>Pseudomonas aerguinosa</i> genotypes supports <i>lasR</i> mutant fitness.	bioRxiv	2023
37293838	In host evolution of Exophiala dermatitidis in cystic fibrosis lung micro-environment.	G3 (Bethesda)	2023
36541762	Compendium-Wide Analysis of Pseudomonas aeruginosa Core and Accessory Genes Reveals Transcriptional Patterns across Strains PAO1 and PA14.	mSystems	2023
36541761	Computationally Efficient Assembly of Pseudomonas aeruginosa Gene Expression Compendia.	mSystems	2023
34982775	The Candida albicans Cdk8-dependent phosphoproteome reveals repression of hyphal growth through a Flo8-dependent pathway.	PLoS Genet	2022
35710652	CF-Seq, an accessible web application for rapid re-analysis of cystic fibrosis pathogen RNA sequencing studies.	Sci Data	2022
35473297	Transcriptional Response of Candida auris to the Mrr1 Inducers Methylglyoxal and Benomyl.	mSphere	2022
35377166	Nonmotile Subpopulations of <i>Pseudomonas aeruginosa</i> Repress Flagellar Motility in Motile Cells through a Type IV Pilus- and Pel-Dependent Mechanism.	J Bacteriol	2022
35502894	Metabolic basis for the evolution of a common pathogenic Pseudomonas aeruginosa variant.	Elife	2022
36016717	Using genome-wide expression compendia to study microorganisms.	Comput Struct Biotechnol J	2022
36216026	SOPHIE: Generative Neural Networks Separate Common and Specific Transcriptional Responses.	Genomics Proteomics Bioinformatics	2022
33319423	Mrr1 regulation of methylglyoxal catabolism and methylglyoxal-induced fluconazole resistance in Candida lusitaniae.	Mol Microbiol	2021
33785623	Balancing Positive and Negative Selection: <i>In Vivo</i> Evolution of Candida lusitaniae <i>MRR1</i>.	mBio	2021
33927050	Calprotectin-Mediated Zinc Chelation Inhibits Pseudomonas aeruginosa Protease Activity in Cystic Fibrosis Sputum.	J Bacteriol	2021
33707263	<i>Debaryomyces</i> is enriched in Crohn's disease intestinal tissue and impairs healing in mice.	Science	2021
34464427	Editorial overview of Pearls Microbiome Series: E pluribus unum.	PLoS Pathog	2021
34544277	Model Systems to Study the Chronic, Polymicrobial Infections in Cystic Fibrosis: Current Approaches and Exploring Future Directions.	mBio	2021
34160236	Both Pseudomonas aeruginosa and Candida albicans Accumulate Greater Biomass in Dual-Species Biofilms under Flow.	mSphere	2021
34034081	Intraspecies heterogeneity in microbial interactions.	Curr Opin Microbiol	2021
34260396	Let-7b-5p in vesicles secreted by human airway cells reduces biofilm formation and increases antibiotic sensitivity of <i>P. aeruginosa</i>.	Proc Natl Acad Sci U S A	2021
32843558	Intraspecies Signaling between Common Variants of Pseudomonas aeruginosa Increases Production of Quorum-Sensing-Controlled Virulence Factors.	mBio	2020
32098815	Social Cooperativity of Bacteria during Reversible Surface Attachment in Young Biofilms: a Quantitative Comparison of Pseudomonas aeruginosa PA14 and PAO1.	mBio	2020
31980538	<i>Pseudomonas aeruginosa lasR</i> mutant fitness in microoxia is supported by an Anr-regulated oxygen-binding hemerythrin.	Proc Natl Acad Sci U S A	2020
31707335	Structure and redox properties of the diheme electron carrier cytochrome c<sub>4</sub> from Pseudomonas aeruginosa.	J Inorg Biochem	2020
33140829	Correcting for experiment-specific variability in expression compendia can remove underlying signals.	Gigascience	2020
30682135	Tobramycin reduces key virulence determinants in the proteome of Pseudomonas aeruginosa outer membrane vesicles.	PLoS One	2019
31744546	The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.	Genome Biol	2019
31379861	Regulation of <i>Pseudomonas aeruginosa</i>-Mediated Neutrophil Extracellular Traps.	Front Immunol	2019
31575774	New Mitochondrial Targets in Fungal Pathogens.	mBio	2019
31109994	Ethanol Decreases Pseudomonas aeruginosa Flagellar Motility through the Regulation of Flagellar Stators.	J Bacteriol	2019
30936375	Ethanol Stimulates Trehalose Production through a SpoT-DksA-AlgU-Dependent Pathway in Pseudomonas aeruginosa.	J Bacteriol	2019
28982736	An epoxide hydrolase secreted by Pseudomonas aeruginosa decreases mucociliary transport and hinders bacterial clearance from the lung.	Am J Physiol Lung Cell Mol Physiol	2018
29988723	PathCORE-T: identifying and visualizing globally co-occurring pathways in large transcriptomic compendia.	BioData Min	2018
30249710	Refining the Application of Microbial Lipids as Tracers of Staphylococcus aureus Growth Rates in Cystic Fibrosis Sputum.	J Bacteriol	2018
30089648	Profiling of Bacterial and Fungal Microbial Communities in Cystic Fibrosis Sputum Using RNA.	mSphere	2018
30463924	Genetic Analysis of <i>NDT80</i> Family Transcription Factors in <i>Candida albicans</i> Using New CRISPR-Cas9 Approaches.	mSphere	2018
30389707	Evolution of drug resistance in an antifungal-naive chronic <i>Candida lusitaniae</i> infection.	Proc Natl Acad Sci U S A	2018
29788231	Role of quorum sensing and chemical communication in fungal biotechnology and pathogenesis.	FEMS Microbiol Rev	2018
29596508	Pearls collections: What we can learn about infectious disease and cancer.	PLoS Pathog	2018
29311282	A Multimodal Strategy Used by a Large c-di-GMP Network.	J Bacteriol	2018
28711280	Unsupervised Extraction of Stable Expression Signatures from Public Compendia with an Ensemble of Neural Networks.	Cell Syst	2017

1 - 50 of 120

Abigail L Lind

Gladstone Institute for Data Science and Biotechnology, Gladstone Institutes

Career Start Year 2013

Number of shared co-authors 0

George Kritikos

Institute of Microbiology and Infection, University of Birmingham

Career Start Year 2011

Number of shared co-authors 0

Jan Claesen

Lerner Research Institute of the Cleveland Clinic

Career Start Year 2010

Number of shared co-authors 0

David J Gonzalez

Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California

Career Start Year 2008

Number of shared co-authors 0

Anthony L Shiver

Stanford University

Career Start Year 2007

Number of shared co-authors 0

Marcus C Chibucos

Institute for Genome Sciences, University of Maryland School of Medicine

Career Start Year 2006

Number of shared co-authors 3

Christopher J Fields

University of Illinois Urbana-Champaign

Career Start Year 2005

Number of shared co-authors 0

Athanasios Typas

University of California san francisco

Career Start Year 2005

Number of shared co-authors 0

Megan Bergkessel

University of Dundee

Career Start Year 2004

Number of shared co-authors 0

Michael A Fischbach

Stanford University

Career Start Year 2003

Number of shared co-authors 1

Adam M Deutschbauer

Lawrence Berkeley National Laboratory

Career Start Year 2002

Number of shared co-authors 5

Marcia Regina von Zeska Kress

School of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo (USP)

Career Start Year 2001

Number of shared co-authors 0

Aindrila Mukhopadhyay

Joint BioEnergy Institute

Career Start Year 2000

Number of shared co-authors 0

Erik L Hendrickson

University of Washington

Career Start Year 2000

Number of shared co-authors 0

Martin Fraunholz

Julius-Maximilians-Universitat Wurzburg

Career Start Year 1998

Number of shared co-authors 0

Marcin P Joachimiak

E O Lawrence Berkeley National Laboratory, UCSF Medical Center, University of California, Berkeley, University of Chicago

Career Start Year 1997

Number of shared co-authors 1

Craig Daniels

The Hospital for Sick Children

Career Start Year 1997

Number of shared co-authors 0

Atul Kumar Johri

Jawaharlal Nehru University

Career Start Year 1996

Number of shared co-authors 0

Hyeseung Lee

Picower Institute for Learning and Memory, Massachusetts Institute of Technology

Career Start Year 1996

Number of shared co-authors 0

Fiona S L Brinkman

Simon Fraser University

Career Start Year 1995

Number of shared co-authors 1

Paul de Figueiredo

Texas A&M University, College Station

Career Start Year 1995

Number of shared co-authors 0

James R Brown

GlaxoSmithKline Pharma R&D, 1250 S. Collegeville Rd, Collegeville

Career Start Year 1994

Number of shared co-authors 0

Minh Thu Nguyen

Institute of Medical Microbiology, University Hospital of Munster

Career Start Year 1993

Number of shared co-authors 0

Ian T Paulsen

Macquarie University

Career Start Year 1992

Number of shared co-authors 3

Istv??n Nagy

Institute of Biochemistry, HUN-REN Biological Research Centre

Career Start Year 1991

Number of shared co-authors 0

Lee Ann McCue

Pacific Northwest National Laboratory

Career Start Year 1991

Number of shared co-authors 0

Alan J Wolfe

Stritch School of Medicine, Loyola University Chicago

Career Start Year 1987

Number of shared co-authors 2

Christophe d'Enfert

Institut Pasteur, Universite Paris Cite

Career Start Year 1985

Number of shared co-authors 1

Douglas B Kell

Novo Nordisk Foundation Centre for Biosustainability, Technical University of Denmark

Career Start Year 1978

Number of shared co-authors 0

Robert E W Hancock

University of British Columbia

Career Start Year 1974

Number of shared co-authors 0

row(s) 1 - 30 of 30

Thomas H Hampton

Geisel School of Medicine, Dartmouth College

Co-authored papers 16

George A O'Toole

Geisel School of Medicine at Dartmouth

Co-authored papers 15

Bruce A Stanton

Dartmouth College

Co-authored papers 14

Casey S Greene

Dartmouth College Geisel School of Medicine, Princeton University, University of Colorado Anschutz Medical Campus, University of Pennsylvania Perelman School of Medicine

Co-authored papers 14

Georgia Doing

Geisel School of Medicine at Dartmouth

Co-authored papers 11

Casey S Greene

Co-authored papers 11

John H Hammond

Massachusetts Institute of Technology

Co-authored papers 10

Alexandra J Lee

University of Pennsylvania

Co-authored papers 8