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Author Details

John Klimek
Oregon Health & Science University
2008
19
12
PMIDPaper TitleJournal TitlePublished Year
36912080The ubiquitin-specific protease USP36 SUMOylates EXOSC10 and promotes the nucleolar RNA exosome function in rRNA processing.Nucleic Acids Res2023
35241737Proteomic analysis distinguishes extracellular vesicles produced by cancerous versus healthy pancreatic organoids.Sci Rep2022
35646545A clickable photoaffinity probe of betulinic acid identifies tropomyosin as a target.Acta Pharm Sin B2022
34677084Platelet proteome dynamics in hibernating 13-lined ground squirrels.Physiol Genomics2021
33852194The deubiquitinase USP36 promotes snoRNP group SUMOylation and is essential for ribosome biogenesis.EMBO Rep2021
32640021Phosphoproteomic quantitation and causal analysis reveal pathways in GPVI/ITAM-mediated platelet activation programs.Blood2020
33209664The vasal fluid proteomic profile and microscopic sperm presence at time of vasectomy reversal.Transl Androl Urol2020
30977292Identification, Quantification, and System Analysis of Protein N-ε Lysine Methylation in Anucleate Blood Platelets.Proteomics2019
31255707Identification of PKCα-dependent phosphoproteins in mouse retina.J Proteomics2019
28951044Proteomic analysis of the glutathione-deficient LEGSKO mouse lens reveals activation of EMT signaling, loss of lens specific markers, and changes in stress response proteins.Free Radic Biol Med2017
28165724Persulfide Formation Mediates Cysteine and Homocysteine Biosynthesis in Methanosarcina acetivorans.Biochemistry2017
28325852Extended Multiplexing of Tandem Mass Tags (TMT) Labeling Reveals Age and High Fat Diet Specific Proteome Changes in Mouse Epididymal Adipose Tissue.Mol Cell Proteomics2017
26246429Separating myoblast differentiation from muscle cell fusion using IGF-I and the p38 MAP kinase inhibitor SB202190.Am J Physiol Cell Physiol2015
24295401Accurate label-free protein quantitation with high- and low-resolution mass spectrometers.J Proteome Res2014
22307652Distinct energy metabolism of auditory and vestibular sensory epithelia revealed by quantitative mass spectrometry using MS2 intensity.Proc Natl Acad Sci U S A2012
20538033On the biomarkers and mechanisms of konzo, a distinct upper motor neuron disease associated with food (cassava) cyanogenic exposure.Food Chem Toxicol2011
21304972Na+/K+-ATPase α1 identified as an abundant protein in the blood-labyrinth barrier that plays an essential role in the barrier integrity.PLoS One2011
17711323The standard protein mix database: a diverse data set to assist in the production of improved Peptide and protein identification software tools.J Proteome Res2008
18564857Quantification of the compositional information provided by immonium ions on a quadrupole-time-of-flight mass spectrometer.Anal Chem2008
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Collaborators

Larry L David
Oregon Health and Science University
Co-authored papers 16
Phillip A Wilmarth
Oregon Health & Science University
Co-authored papers 8
Peter G Gillespie
Oregon Hearing Research Center & Vollum Institute, Oregon Health & Science University
Co-authored papers 3
Jessica Minnier
Louis Stokes Cleveland VA Medical Center Cleveland
Co-authored papers 3
Joseph E Aslan
Oregon Health & Science University
Co-authored papers 3
Dongseok Choi
Oregon Health & Science University School of Medicine
Co-authored papers 2
Rosalie C Sears
Oregon Health and Science University
Co-authored papers 2
Jung-Bum Shin
University of Virginia
Co-authored papers 2
Jimmy K Eng
University of Washington
Co-authored papers 2
Ozgun Babur
Houston Methodist Research Institute
Co-authored papers 2
Ruedi Aebersold
Institute of Molecular Systems Biology, ETH Zurich
Co-authored papers 1
Erin D Jeffery
Agenus Inc, American Society for Mass Spectrometry, Hartwick College, Human Proteome Organisation, Large Scale Biology Corp, University of Virginia
Co-authored papers 1
James S Eddes
Co-authored papers 1
Benjamin J Rauch
Portland State University
Co-authored papers 1
Nicholas E Sherman
University of Virginia
Co-authored papers 1
Daniel L Marks
Pape Family Pediatric Research Institute, Oregon Health & Science University
Co-authored papers 1
Ujwal Shinde
Oregon Health & Science University
Co-authored papers 1
Kateri J Spinelli
Center for Cardiovascular Analytics, Providence Heart Institute
Co-authored papers 1
Parag Mallick
Stanford University
Co-authored papers 1
Emek Demir
Knight Cancer Institute, Oregon Health & Science University
Co-authored papers 1
Jocelyn F Krey
Oregon Hearing Research Center & Vollum Institute, Oregon Health & Science University
Co-authored papers 1
Jonathan C Savage
Knight Cancer Institute, Oregon Health & Science University
Co-authored papers 1
Olga Vitek
Khoury College of Computer Sciences, Northeastern University
Co-authored papers 1
Alexander Schmidt
Co-authored papers 1
Abigail C Buenafe
Pape Family Pediatric Research Institute, Oregon Health and Science University
Co-authored papers 1
Release 1.2