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Author Details

Steve Ferriera
Broad Institute of MIT and Harvard
1993
45
26
PMIDPaper TitleJournal TitlePublished Year
33536625Author Correction: The mutational constraint spectrum quantified from variation in 141,456 humans.Nature2021
33770507Low-coverage sequencing cost-effectively detects known and novel variation in underrepresented populations.Am J Hum Genet2021
32461654The mutational constraint spectrum quantified from variation in 141,456 humans.Nature2020
29739332Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms.BMC Genomics2018
24824441Ecotype diversity and conversion in Photobacterium profundum strains.PLoS One2014
23723392Draft Genome Sequence of the Deep-Sea Bacterium Shewanella benthica Strain KT99.Genome Announc2013
23723403Complete Genome Sequence of the Deep-Sea Bacterium Psychromonas Strain CNPT3.Genome Announc2013
22461554Genome sequence of "Candidatus Nitrosoarchaeum limnia" BG20, a low-salinity ammonia-oxidizing archaeon from the San Francisco Bay estuary.J Bacteriol2012
22461555Genome sequence of "Candidatus Nitrosopumilus salaria" BD31, an ammonia-oxidizing archaeon from the San Francisco Bay estuary.J Bacteriol2012
21183675Complete genome sequence of Algoriphagus sp. PR1, bacterial prey of a colony-forming choanoflagellate.J Bacteriol2011
22180817Draft genome sequence of Caminibacter mediatlanticus strain TB-2, an epsilonproteobacterium isolated from a deep-sea hydrothermal vent.Stand Genomic Sci2011
21966516Mariprofundus ferrooxydans PV-1 the first genome of a marine Fe(II) oxidizing Zetaproteobacterium.PLoS One2011
21952547Genome sequence of the marine photoheterotrophic bacterium Erythrobacter sp. strain NAP1.J Bacteriol2011
21697100Dynamics of gene duplication in the genomes of chlorophyll d-producing cyanobacteria: implications for the ecological niche.Genome Biol Evol2011
21478352Draft genome sequence of the chemolithoheterotrophic, halophilic methylotroph Methylophaga thiooxydans DMS010.J Bacteriol2011
21075932Genome sequence of the Marine Janibacter Sp. Strain HTCC2649.J Bacteriol2011
20626842Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire.Genome Biol2010
21048761Genomic and functional adaptation in surface ocean planktonic prokaryotes.Nature2010
20729358Genome sequences of Pelagibaca bermudensis HTCC2601T and Maritimibacter alkaliphilus HTCC2654T, the type strains of two marine Roseobacter genera.J Bacteriol2010
20707908Distinguishing between cancer driver and passenger gene alteration candidates via cross-species comparison: a pilot study.BMC Cancer2010
20489017A catalog of reference genomes from the human microbiome.Science2010
20472793Genome sequences of strains HTCC2148 and HTCC2080, belonging to the OM60/NOR5 clade of the Gammaproteobacteria.J Bacteriol2010
20472792Genome sequence of the novel marine member of the Gammaproteobacteria strain HTCC5015.J Bacteriol2010
20639333Complete genome sequence of Croceibacter atlanticus HTCC2559T.J Bacteriol2010
20639329Genome sequence of Fulvimarina pelagi HTCC2506T, a Mn(II)-oxidizing alphaproteobacterium possessing an aerobic anoxygenic photosynthetic gene cluster and Xanthorhodopsin.J Bacteriol2010
20601481Genome sequence of the oligotrophic marine Gammaproteobacterium HTCC2143, isolated from the Oregon Coast.J Bacteriol2010
19168610Complete genome sequence of Erythrobacter litoralis HTCC2594.J Bacteriol2009
19805210The genomic basis of trophic strategy in marine bacteria.Proc Natl Acad Sci U S A2009
19767438Complete genome sequence of Robiginitalea biformata HTCC2501.J Bacteriol2009
18405373Novel computational methods for increasing PCR primer design effectiveness in directed sequencing.BMC Bioinformatics2008
18813346Analysis of the Pseudoalteromonas tunicata genome reveals properties of a surface-associated life style in the marine environment.PLoS One2008
18507822Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria.Genome Biol2008
18670397Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter.ISME J2008
17299055Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis.Proc Natl Acad Sci U S A2007
18159947Patterns and implications of gene gain and loss in the evolution of Prochlorococcus.PLoS Genet2007
16840556A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes.Proc Natl Acad Sci U S A2006
16186508Sequence survey of receptor tyrosine kinases reveals mutations in glioblastomas.Proc Natl Acad Sci U S A2005
15057822Genome sequence of the Brown Norway rat yields insights into mammalian evolution.Nature2004
14671302Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios.Science2003
15338650Positive selection in the human genome inferred from human-chimp-mouse orthologous gene alignments.Cold Spring Harb Symp Quant Biol2003
12040188A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome.Science2002
11181995The sequence of the human genome.Science2001
10731132The genome sequence of Drosophila melanogaster.Science2000
7506085Suprachiasmatic nucleus neurochemistry in the conscious brain: correlation with circadian activity rhythms.J Biol Rhythms1993
8372092Daily profile of the extracellular concentration of glutamate in the suprachiasmatic region of the Siberian hamster.Proc Soc Exp Biol Med1993
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Collaborators

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The J. Craig Venter Institute
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Co-authored papers 6
Case Western Reserve University School of Medicine
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Johns Hopkins Bayview Research Campus
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Vanderbilt University, Columbia University Medical Center
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Center for Genomics and Bioinformatics, Indiana University
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BC Cancer Research Institute
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Institute of Psychology, Jagiellonian University
Co-authored papers 4
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Xuzhou Kuangshan Hospital
Co-authored papers 4
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Co-authored papers 4
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Mayo Clinic
Co-authored papers 4
GE Global Research Center
Co-authored papers 4
University of Utah
Co-authored papers 4
Oncology R&D
Co-authored papers 3
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Baylor College of Medicine
Co-authored papers 3
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