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Author Details

Marisa F Nicol??s
2004
44
19
PMIDPaper TitleJournal TitlePublished Year
36704545The gene regulatory network of <i>Staphylococcus aureus</i> ST239-SCC<i>mec</i>III strain Bmb9393 and assessment of genes associated with the biofilm in diverse backgrounds.Front Microbiol2023
37359724PPIntegrator: semantic integrative system for protein-protein interaction and application for host-pathogen datasets.Bioinform Adv2023
35174104Pathway Driven Target Selection in <i>Klebsiella pneumoniae</i>: Insights Into Carbapenem Exposure.Front Cell Infect Microbiol2022
36169569Analysis of a novel class A β-lactamase OKP-B-6 of Klebsiella quasipneumoniae: structural characterisation and interaction with commercially available drugs.Mem Inst Oswaldo Cruz2022
34177572From Genome to Drugs: New Approaches in Antimicrobial Discovery.Front Pharmacol2021
36303787Large-Scale Protein Interactions Prediction by Multiple Evidence Analysis Associated With an In-Silico Curation Strategy.Front Bioinform2021
33734031Reductive evolution of virulence repertoire to drive the divergence between community- and hospital-associated methicillin-resistant <i>Staphylococcus aureus</i> of the ST1 lineage.Virulence2021
33692377Drug design and repurposing with DockThor-VS web server focusing on SARS-CoV-2 therapeutic targets and their non-synonym variants.Sci Rep2021
34616771A Systematic Strategy to Find Potential Therapeutic Targets for <i>Pseudomonas aeruginosa</i> Using Integrated Computational Models.Front Mol Biosci2021
33028683Clinical and Molecular Description of a High-Copy IncQ1 KPC-2 Plasmid Harbored by the International ST15 Klebsiella pneumoniae Clone.mSphere2020
31712802An Emerging Clone, Klebsiellapneumoniae Carbapenemase 2-Producing K. pneumoniae Sequence Type 16, Associated With High Mortality Rates in a CC258-Endemic Setting.Clin Infect Dis2020
30336451Structural analysis of a novel N-carbamoyl-d-amino acid amidohydrolase from a Brazilian Bradyrhizobium japonicum strain: In silico insights by molecular modelling, docking and molecular dynamics.J Mol Graph Model2019
29705064Corrigendum to "A whole genome bioinformatic approach to determine potential latent phase specific targets in Mycobacterium tuberculosis" [Tuberculosis 97 (March 2016) 181-192].Tuberculosis (Edinb)2018
30018343An integrative, multi-omics approach towards the prioritization of Klebsiella pneumoniae drug targets.Sci Rep2018
30317019Characterization of Laguncularia racemosa transcriptome and molecular response to oil pollution.Aquat Toxicol2018
30588041Community-acquired methicillin-resistant <i>Staphylococcus aureus</i> from ST1 lineage harboring a new SCC<i>mec</i> IV subtype (SCC<i>mec</i> IVm) containing the <i>tetK</i> gene.Infect Drug Resist2018
29503635Comparative Genomic Analysis of a Clinical Isolate of <i>Klebsiella quasipneumoniae</i> subsp. <i>similipneumoniae</i>, a KPC-2 and OKP-B-6 Beta-Lactamases Producer Harboring Two Drug-Resistance Plasmids from Southeast Brazil.Front Microbiol2018
29091141Complete genome sequence of community-associated methicillin-resistant Staphylococcus aureus (strain USA400-0051), a prototype of the USA400 clone.Mem Inst Oswaldo Cruz2017
26791267A whole genome bioinformatic approach to determine potential latent phase specific targets in Mycobacterium tuberculosis.Tuberculosis (Edinb)2016
27703449Exploratory Investigation of <i>Bacteroides fragilis</i> Transcriptional Response during <i>In vitro</i> Exposure to Subinhibitory Concentration of Metronidazole.Front Microbiol2016
27635055Complete Genome Sequence of the MRSA Isolate HC1335 from ST239 Lineage Displaying a Truncated AgrC Histidine Kinase Receptor.Genome Biol Evol2016
27801293The polymyxin B-induced transcriptomic response of a clinical, multidrug-resistant Klebsiella pneumoniae involves multiple regulatory elements and intracellular targets.BMC Genomics2016
27152133Complete genome sequence of an agr-dysfunctional variant of the ST239 lineage of the methicillin-resistant Staphylococcus aureus strain GV69 from Brazil.Stand Genomic Sci2016
27451438Reply to "Mobilization of blaBKC-1 by ISKpn23?".Antimicrob Agents Chemother2016
27265234A unique SaeS allele overrides cell-density dependent expression of saeR and lukSF-PV in the ST30-SCCmecIV lineage of CA-MRSA.Int J Med Microbiol2016
27522532Comparative metagenome of a stream impacted by the urbanization phenomenon.Braz J Microbiol2016
26055384Characterization of BKC-1 class A carbapenemase from Klebsiella pneumoniae clinical isolates in Brazil.Antimicrob Agents Chemother2015
26600536Integrity of prokaryotic mRNA isolated from complex samples for in vivo bacterial transcriptome analysis.Genet Mol Res2015
24450656Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms.BMC Genomics2014
24670056De novo transcriptome analysis of Hevea brasiliensis tissues by RNA-seq and screening for molecular markers.BMC Genomics2014
23761445The genome of Anopheles darlingi, the main neotropical malaria vector.Nucleic Acids Res2013
23929475Complete Genome Sequence of a Variant of the Methicillin-Resistant Staphylococcus aureus ST239 Lineage, Strain BMB9393, Displaying Superior Ability To Accumulate ica-Independent Biofilm.Genome Announc2013
22876890AtlasT4SS: a curated database for type IV secretion systems.BMC Microbiol2012
23270491Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.).BMC Genomics2012
22882772Pyrosequencing-based analysis reveals a novel capsular gene cluster in a KPC-producing Klebsiella pneumoniae clinical isolate identified in Brazil.BMC Microbiol2012
21509043Common ancestry of iron oxide- and iron-sulfide-based biomineralization in magnetotactic bacteria.ISME J2011
22072650Draft genome sequence of Bizionia argentinensis, isolated from Antarctic surface water.J Bacteriol2011
21589895Genome of Herbaspirillum seropedicae strain SmR1, a specialized diazotrophic endophyte of tropical grasses.PLoS Genet2011
21493686Distinct patterns of somatic alterations in a lymphoblastoid and a tumor genome derived from the same individual.Nucleic Acids Res2011
19184146Novel genes related to nodulation, secretion systems, and surface structures revealed by a genome draft of Rhizobium tropici strain PRF 81.Funct Integr Genomics2009
18565227Predicting transcriptional regulatory interactions with artificial neural networks applied to E. coli multidrug resistance efflux pumps.BMC Microbiol2008
16077101Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae.J Bacteriol2005
15960747Genetic characterization of Chromobacterium isolates from black water environments in the Brazilian Amazon.Lett Appl Microbiol2005
15100992Tolerance to stress and environmental adaptability of Chromobacterium violaceum.Genet Mol Res2004
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Collaborators

The National Laboratory for Scientific Computing (LNCC)
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Center for Implant Dentistry, University of Florida
Co-authored papers 20
Unidade de Genomica Computacional Darcy Fontoura de Almeida
Co-authored papers 3
Hospital Sirio-Libanes
Co-authored papers 2
Ribeirao Preto Medical School - University of Sao Paulo
Co-authored papers 2
Instituto de Biofisica Carlos Chagas Filho, Universidade Federal do Rio de Janeiro
Co-authored papers 2
University of Hull
Co-authored papers 2
Faculdade de Ciencias Agrarias e Veterinarias, Universidade Estadual Paulista (UNESP)
Co-authored papers 2
Instituto de Biofisica Carlos Chagas Filho, Universidade Federal do Rio de Janeiro
Co-authored papers 2
Instituto Rene Rachou
Co-authored papers 2
Ludwig Institute for Cancer Research Ltd.
Co-authored papers 1
Ludwig Institute for Cancer Research
Co-authored papers 1
Ludwig Institute for Cancer Research, University of California San Diego
Co-authored papers 1
Hospital Sirio Libanes
Co-authored papers 1
Bluestar Genomics Inc.
Co-authored papers 1
International Center for Research, A. C. Camargo Cancer Center
Co-authored papers 1
Center for Structural Molecular Biology, Federal University of Santa Catarina
Co-authored papers 1
University of Campinas (UNICAMP)
Co-authored papers 1
Institute of Chemistry, University of Sao Paulo
Co-authored papers 1
The Rockefeller University
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Ludwig Institute for Cancer Research
Co-authored papers 1
University of California San Diego
Co-authored papers 1
J. Craig Venter Institute
Co-authored papers 1
Universidade Federal do Rio Grande do Norte
Co-authored papers 1
Center for Genomic and Computational Biology, Duke University.
Co-authored papers 1
Instituto D'Or de Pesquisa e Ensino (IDOR)
Co-authored papers 1
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Center for Epigenomics, University of California San Diego
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Co-authored papers 1