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Author Details

Thomas Junier
Institute of Biology, University of Neuchatel
1998
59
28
PMIDPaper TitleJournal TitlePublished Year
36375000Viral Genetic Determinants of Prolonged Respiratory Syncytial Virus Infection Among Infants in a Healthy Term Birth Cohort.J Infect Dis2023
36918804Assessment of fungal spores and spore-like diversity in environmental samples by targeted lysis.BMC Microbiol2023
33440006Democratization of fungal highway columns as a tool to investigate bacteria associated with soil fungi.FEMS Microbiol Ecol2021
33929935Blood virosphere in febrile Tanzanian children.Emerg Microbes Infect2021
34621007Widespread bacterial diversity within the bacteriome of fungi.Commun Biol2021
33139591Virosaurus A Reference to Explore and Capture Virus Genetic Diversity.Viruses2020
30478230Remedial Treatment of Corroded Iron Objects by Environmental <i>Aeromonas</i> Isolates.Appl Environ Microbiol2019
31614367Comparison of the plant growth-promotion performance of a consortium of Bacilli inoculated as endospores or as vegetative cells.FEMS Microbiol Ecol2019
31466373Viral Metagenomics in the Clinical Realm: Lessons Learned from a Swiss-Wide Ring Trial.Genes (Basel)2019
30804904Adaptive Strategies in a Poly-Extreme Environment: Differentiation of Vegetative Cells in <i>Serratia ureilytica</i> and Resistance to Extreme Conditions.Front Microbiol2019
30798805Bacterial spores, from ecology to biotechnology.Adv Appl Microbiol2019
30999808Detection of dicistroviruses RNA in blood of febrile Tanzanian children.Emerg Microbes Infect2019
29312823A historical legacy of antibiotic utilization on bacterial seed banks in sediments.PeerJ2018
29942682Dissemination of antibiotic resistance genes associated with the sporobiota in sediments impacted by wastewater.PeerJ2018
29535292Detection of novel astroviruses MLB1 and MLB2 in the sera of febrile Tanzanian children.Emerg Microbes Infect2018
27575535MAR-Mediated transgene integration into permissive chromatin and increased expression by recombination pathway engineering.Biotechnol Bioeng2017
28716935Severe viral respiratory infections in children with <i>IFIH1</i> loss-of-function mutations.Proc Natl Acad Sci U S A2017
26748805Diversity and ecology of oxalotrophic bacteria.World J Microbiol Biotechnol2016
26527719CEGA--a catalog of conserved elements from genomic alignments.Nucleic Acids Res2016
27857706A Combination of Extreme Environmental Conditions Favor the Prevalence of Endospore-Forming Firmicutes.Front Microbiol2016
27419173Contribution of Genetic Background and Clinical Risk Factors to Low-Trauma Fractures in Human Immunodeficiency Virus (HIV)-Positive Persons: The Swiss HIV Cohort Study.Open Forum Infect Dis2016
27126386Anoxybacillusgeothermalis sp. nov., a facultatively anaerobic, endospore-forming bacterium isolated from mineral deposits in a geothermal station.Int J Syst Evol Microbiol2016
26863128Physical Isolation of Endospores from Environmental Samples by Targeted Lysis of Vegetative Cells.J Vis Exp2016
25973144Under-detection of endospore-forming Firmicutes in metagenomic data.Comput Struct Biotechnol J2015
26316638Genome Sequence of Bacillus alveayuensis Strain 24KAM51, a Halotolerant Thermophile Isolated from a Hydrothermal Vent.Genome Announc2015
26316637Genome Sequence of Aeribacillus pallidus Strain GS3372, an Endospore-Forming Bacterium Isolated in a Deep Geothermal Reservoir.Genome Announc2015
26148002MLgsc: A Maximum-Likelihood General Sequence Classifier.PLoS One2015
26067952Genome Sequence of Anoxybacillus geothermalis Strain GSsed3, a Novel Thermophilic Endospore-Forming Species.Genome Announc2015
25838492Genome Sequence of Kosakonia radicincitans Strain YD4, a Plant Growth-Promoting Rhizobacterium Isolated from Yerba Mate (Ilex paraguariensis St. Hill.).Genome Announc2015
25756117Endospore-enriched sequencing approach reveals unprecedented diversity of Firmicutes in sediments.Environ Microbiol Rep2014
22983951Purifying selection in mammalian mitochondrial protein-coding genes is highly effective and congruent with evolution of nuclear genes.Mol Biol Evol2013
24249300Stage 0 sporulation gene A as a molecular marker to study diversity of endospore-forming Firmicutes.Environ Microbiol Rep2013
23811505Quantification of endospore-forming firmicutes by quantitative PCR with the functional gene spo0A.Appl Environ Microbiol2013
23532479Contribution of genetic background, traditional risk factors, and HIV-related factors to coronary artery disease events in HIV-positive persons.Clin Infect Dis2013
23052354Impact of highly active antiretroviral therapy on the molecular epidemiology of newly diagnosed HIV infections.AIDS2012
21713005Rhinovirus genome variation during chronic upper and lower respiratory tract infections.PLoS One2011
19830422Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment.Appl Microbiol Biotechnol2010
20485673Rhinovirus genome evolution during experimental human infection.PLoS One2010
20482743The genome of the Gram-positive metal- and sulfate-reducing bacterium Desulfotomaculum reducens strain MI-1.Environ Microbiol2010
20472542The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell.Bioinformatics2010
20075255Functional and evolutionary insights from the genomes of three parasitoid Nasonia species.Science2010
19274459Community analysis of betaproteobacterial ammonia-oxidizing bacteria using the amoCAB operon.Appl Microbiol Biotechnol2009
19402957New respiratory enterovirus and recombinant rhinoviruses among circulating picornaviruses.Emerg Infect Dis2009
19390049The genome sequence of taurine cattle: a window to ruminant biology and evolution.Science2009
19487906The impact of transmission clusters on primary drug resistance in newly diagnosed HIV-1 infection.AIDS2009
17947446Biased distributions and decay of long interspersed nuclear elements in the chicken genome.Genetics2008
18757578TRiFLe, a program for in silico terminal restriction fragment length polymorphism analysis with user-defined sequence sets.Appl Environ Microbiol2008
18541697The cis-acting replication elements define human enterovirus and rhinovirus species.RNA2008
18248438Comparative in silico analysis of PCR primers suited for diagnostics and cloning of ammonia monooxygenase genes from ammonia-oxidizing bacteria.FEMS Microbiol Ecol2008
18405392Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas species.BMC Genomics2008
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Collaborators

Geneva University Hospital
Co-authored papers 13
University of Geneva Medical School
Co-authored papers 11
Los Alamos National Laboratory
Co-authored papers 11
Ecole Polytechnique Federale de Lausanne
Co-authored papers 8
The Research Institute of Molecular Pathology
Co-authored papers 6
Los Alamos National Laboratory
Co-authored papers 4
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Los Alamos National Laboratory
Co-authored papers 3
University of Lausanne
Co-authored papers 3
Los Alamos National Laboratory
Co-authored papers 3
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 2
Softberry Inc.
Co-authored papers 2
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Baylor College of Medicine
Co-authored papers 2
Tianjin Institute of Environmental and Operational Medicine
Co-authored papers 2
Baylor College of Medicine
Co-authored papers 2
Baylor College of Medicine
Co-authored papers 2
National Center for Biotechnology Information, National Institutes of Health
Co-authored papers 2
Baylor College of Medicine
Co-authored papers 2
Oklahoma State University
Co-authored papers 2
Lawrence Berkeley National Laboratory
Co-authored papers 2
Co-authored papers 2
Vir Biotechnology Inc.
Co-authored papers 2
Baylor College of Medicine
Co-authored papers 2
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Baylor College of Medicine
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University of Geneva Medical School
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University of Houston
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Lund University
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Emory University School of Medicine
Co-authored papers 2