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Author Details

Daniel M Gatti
Center for Computational Sciences
2007
66
30
PMIDPaper TitleJournal TitlePublished Year
36759753Genetic mapping of microbial and host traits reveals production of immunomodulatory lipids by Akkermansia muciniphila in the murine gut.Nat Microbiol2023
36973420Author Correction: Genetic mapping of microbial and host traits reveals production of immunomodulatory lipids by Akkermansia muciniphila in the murine gut.Nat Microbiol2023
35672473Author Correction: Defining the consequences of genetic variation on a proteome-wide scale.Nature2022
35383961Genome-wide association mapping of ethanol sensitivity in the Diversity Outbred mouse population.Alcohol Clin Exp Res2022
34045313Uncovering Modifier Genes of X-Linked Alport Syndrome Using a Novel Multiparent Mouse Model.J Am Soc Nephrol2021
34403447CXCL1: A new diagnostic biomarker for human tuberculosis discovered using Diversity Outbred mice.PLoS Pathog2021
32295871The Diversity Outbred Mouse Population Is an Improved Animal Model of Vaccination against Tuberculosis That Reflects Heterogeneity of Protection.mSphere2020
32074270High-throughput sleep phenotyping produces robust and heritable traits in Diversity Outbred mice and their founder strains.Sleep2020
33166789Automatic discovery of clinically interpretable imaging biomarkers for Mycobacterium tuberculosis supersusceptibility using deep learning.EBioMedicine2020
32795400Mapping the Effects of Genetic Variation on Chromatin State and Gene Expression Reveals Loci That Control Ground State Pluripotency.Cell Stem Cell2020
32958938A large-scale genome-lipid association map guides lipid identification.Nat Metab2020
32877673Cross-Species Analyses Identify Dlgap2 as a Regulator of Age-Related Cognitive Decline and Alzheimer's Dementia.Cell Rep2020
32702019Nine quick tips for efficient bioinformatics curriculum development and training.PLoS Comput Biol2020
32494593Genomic mapping in outbred mice reveals overlap in genetic susceptibility for HZE ion- and γ-ray-induced tumors.Sci Adv2020
32170957Nitrosative Stress and Lipid Homeostasis as a Mechanism for Zileuton Hepatotoxicity and Resistance in Genetically Sensitive Mice.Toxicol Sci2020
30591514R/qtl2: Software for Mapping Quantitative Trait Loci with High-Dimensional Data and Multiparent Populations.Genetics2019
31465442Genetic determinants of gut microbiota composition and bile acid profiles in mice.PLoS Genet2019
31263061Doxorubicin-Induced Cardiotoxicity in Collaborative Cross (CC) Mice Recapitulates Individual Cardiotoxicity in Humans.G3 (Bethesda)2019
31343992Gene loci associated with insulin secretion in islets from non-diabetic mice.J Clin Invest2019
31335644Genetic mapping in Diversity Outbred mice identifies a Trpa1 variant influencing late-phase formalin response.Pain2019
31042701Mouse genome-wide association and systems genetics identifies Lhfp as a regulator of bone mass.PLoS Genet2019
30877082Cleaning Genotype Data from Diversity Outbred Mice.G3 (Bethesda)2019
30515527Correction to: Quantitative trait mapping in Diversity Outbred mice identifies two genomic regions associated with heart size.Mamm Genome2019
28607509Genetic background influences susceptibility to chemotherapy-induced hematotoxicity.Pharmacogenomics J2018
29957589Erratum: "Diversity Outbred Mice Identify Population-Based Exposure Thresholds and Genetic Factors that Influence Benzene-Induced Genotoxicity".Environ Health Perspect2018
29900007Use of integrated imaging and serum biomarker profiles to identify subclinical dysfunction in pediatric cancer patients treated with anthracyclines.Cardiooncology2018
30141982Identification of a novel microRNA profile in pediatric patients with cancer treated with anthracycline chemotherapy.Am J Physiol Heart Circ Physiol2018
29423138Developmental constraint through negative pleiotropy in the zygomatic arch.Evodevo2018
29691636Genome-wide association for testis weight in the diversity outbred mouse population.Mamm Genome2018
29567659Genetic Drivers of Pancreatic Islet Function.Genetics2018
29279960Quantitative trait mapping in Diversity Outbred mice identifies two genomic regions associated with heart size.Mamm Genome2018
29193816Genetic Fine-Mapping and Identification of Candidate Genes and Variants for Adiposity Traits in Outbred Rats.Obesity (Silver Spring)2018
27916600Mapping Complex Traits in a Diversity Outbred F1 Mouse Population Identifies Germline Modifiers of Metastasis in Human Prostate Cancer.Cell Syst2017
28592500Epistatic Networks Jointly Influence Phenotypes Related to Metabolic Disease and Gene Expression in Diversity Outbred Mice.Genetics2017
28592499Structural Variation Shapes the Landscape of Recombination in Mouse.Genetics2017
28605406CloudNeo: a cloud pipeline for identifying patient-specific tumor neoantigens.Bioinformatics2017
27933529QTL Mapping and Identification of Candidate Genes in DO Mice: A Use Case Model Derived from a Benzene Toxicity Experiment.Methods Mol Biol2017
26882987R2d2 Drives Selfish Sweeps in the House Mouse.Mol Biol Evol2016
26614740Genetic Architectures of Quantitative Variation in RNA Editing Pathways.Genetics2016
28007037Block network mapping approach to quantitative trait locus analysis.BMC Bioinformatics2016
27694113Diversity Outbred Mice at 21: Maintaining Allelic Variation in the Face of Selection.G3 (Bethesda)2016
27309819Defining the consequences of genetic variation on a proteome-wide scale.Nature2016
25070661Genetic Regulation of Female Sexual Maturation and Longevity Through Circulating IGF1.J Gerontol A Biol Sci Med Sci2015
26357913Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays.Genome Biol2015
26204894Lung necrosis and neutrophils reflect common pathways of susceptibility to Mycobacterium tuberculosis in genetically diverse, immune-competent mice.Dis Model Mech2015
25679959A multi-megabase copy number gain causes maternal transmission ratio distortion on mouse chromosome 2.PLoS Genet2015
25446466Sensitivity to hepatotoxicity due to epigallocatechin gallate is affected by genetic background in diversity outbred mice.Food Chem Toxicol2015
25532804Diet dominates host genotype in shaping the murine gut microbiota.Cell Host Microbe2015
25376053Diversity Outbred Mice Identify Population-Based Exposure Thresholds and Genetic Factors that Influence Benzene-Induced Genotoxicity.Environ Health Perspect2015
24700285Precise genetic mapping and integrative bioinformatics in Diversity Outbred mice reveals Hydin as a novel pain gene.Mamm Genome2014
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Collaborators

Gary A Churchill
Tufts University
Co-authored papers 36
Karen L Svenson
Co-authored papers 15
Elissa J Chesler
Center for Systems Neurogenetics of Addiction at The Jackson Laboratory
Co-authored papers 14
Karl W Broman
Co-authored papers 10
Ivan Rusyn
Co-authored papers 9
Daniel Pomp
Co-authored papers 7
David W Threadgill
College Station
Co-authored papers 7
Kunjie Hua
Co-authored papers 6
Fernando Pardo-Manuel de Villena
University of North Carolina
Co-authored papers 6
Fred A Wright
Co-authored papers 5
Andrew P Morgan
Duke University School of Medicine, Duke University
Co-authored papers 4
Carol J Bult
The Jackson Laboratory Cancer Center
Co-authored papers 4
Abraham A Palmer
McMaster University & St. Joseph's Healthcare Hamilton
Co-authored papers 3
Leonard McMillan
University of North Carolina
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Vivek M Philip
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Lu Lu
University of Tennessee Health Science Center
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Rachel C McMullan
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Andrey A Shabalin
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Timothy A Bell
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William Valdar
University of North Carolina at Chapel Hill
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Edward L Huttlin
Harvard Medical School
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Allan I Pack
University of Pennsylvania Perelman School of Medicine
Co-authored papers 2
Robert W Williams
Mayo Clinic
Co-authored papers 2
Brian C Jensen
Co-authored papers 2
Steven P Gygi
Harvard Medical School
Co-authored papers 2
Christina Kendziorski
University of Wisconsin-Madison
Co-authored papers 2
Saunak Sen
University of Tennessee Health Science Center
Co-authored papers 2
Riyan Cheng
University of California
Co-authored papers 2
Benjamin Mansky
Middlebury College
Co-authored papers 2
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