Author details

Full Name

Ugis Sarkans

Affiliation

ORCID

Career Start Year

2001

Papers

H Index

Expertise

CM4AI Collaborator

PMID	Paper Title	Journal Title	Published Year
37537341	Providing open imaging data at scale: An EMBL-EBI perspective.	Histochem Cell Biol	2023
37964598	"Be sustainable": EOSC-Life recommendations for implementation of FAIR principles in life science data handling.	EMBO J	2023
35086829	The discovAIR project: a roadmap towards the Human Lung Cell Atlas.	Eur Respir J	2022
35189131	The BioImage Archive - Building a Home for Life-Sciences Microscopy Data.	J Mol Biol	2022
33211879	From ArrayExpress to BioStudies.	Nucleic Acids Res	2021
33490973	Data-deposition protocols for correlative soft X-ray tomography and super-resolution structured illumination microscopy applications.	STAR Protoc	2021
34021280	REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology.	Nat Methods	2021
33948027	A global view of standards for open image data formats and repositories.	Nat Methods	2021
33060801	Network integration and modelling of dynamic drug responses at multi-omics levels.	Commun Biol	2020
32632539	The EU-ToxRisk method documentation, data processing and chemical testing pipeline for the regulatory use of new approach methods.	Archives of Toxicology	2020
30357387	ArrayExpress update - from bulk to single-cell expression data.	Nucleic Acids Res	2019
29069414	The BioStudies database-one stop shop for all data supporting a life sciences study.	Nucleic Acids Res	2018
28852801	A model-based assay design to reproduce in vivo patterns of acute drug-induced toxicity.	Arch Toxicol	2018
30377375	A call for public archives for biological image data.	Nat Methods	2018
30287931	Publisher Correction: Image Data Resource: a bioimage data integration and publication platform.	Nat Methods	2018
28486464	Discovering and linking public omics data sets using the Omics Discovery Index.	Nat Biotechnol	2017
28775673	The Image Data Resource: A Bioimage Data Integration and Publication Platform.	Nat Methods	2017
28330491	Orchestrating differential data access for translational research: a pilot implementation.	BMC Med Inform Decis Mak	2017
26700850	The BioStudies database.	Mol Syst Biol	2015
25505093	diXa: a data infrastructure for chemical safety assessment.	Bioinformatics	2015
25361974	ArrayExpress update--simplifying data submissions.	Nucleic Acids Res	2015
25861964	Cellular phenotype database: a repository for systems microscopy data.	Bioinformatics	2015
24096533	Biomarkers in autism spectrum disorder: the old and the new.	Psychopharmacology	2014
24265224	Updates to BioSamples database at European Bioinformatics Institute.	Nucleic Acids Res	2014
23193272	ArrayExpress update--trends in database growth and links to data analysis tools.	Nucleic Acids Res	2013
22096232	The BioSample Database (BioSD) at the European Bioinformatics Institute.	Nucleic Acids Res	2012
22556367	graph2tab, a library to convert experimental workflow graphs into tabular formats.	Bioinformatics	2012
21931564	A genome-wide metabolic QTL analysis in Europeans implicates two loci shaped by recent positive selection.	PLoS Genet	2011
21071405	ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments.	Nucleic Acids Res	2011
21878913	Human metabolic profiles are stably controlled by genetic and environmental variation.	Mol Syst Biol	2011
19015125	ArrayExpress update--from an archive of functional genomics experiments to the atlas of gene expression.	Nucleic Acids Res	2009
19633095	A System for Information Management in BioMedical Studies--SIMBioMS.	Bioinformatics	2009
18819076	Data storage and analysis in ArrayExpress and Expression Profiler.	Curr Protoc Bioinformatics	2008
17132828	ArrayExpress--a public database of microarray experiments and gene expression profiles.	Nucleic Acids Res	2007
17921998	The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.	Nat Biotechnol	2007
17291344	PASSIM--an open source software system for managing information in biomedical studies.	BMC Bioinformatics	2007
17087822	A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.	BMC Bioinformatics	2006
16404382	Wrestling with SUMO and bio-ontologies.	Nat Biotechnol	2006
16847461	Standards for systems biology.	Nat Rev Genet	2006
16939801	Data storage and analysis in ArrayExpress.	Methods Enzymol	2006
16219923	Plant-based microarray data at the European Bioinformatics Institute. Introducing AtMIAMExpress, a submission tool for Arabidopsis gene expression data to ArrayExpress.	Plant Physiol	2005
15564302	The ArrayExpress gene expression database: a software engineering and implementation perspective.	Bioinformatics	2005
15608260	ArrayExpress--a public repository for microarray gene expression data at the EBI.	Nucleic Acids Res	2005
15215431	Expression Profiler: next generation--an online platform for analysis of microarray data.	Nucleic Acids Res	2004
14755292	The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data.	Nat Biotechnol	2004
14744115	ArrayExpress: a public database of gene expression data at EBI.	C R Biol	2003
12519949	ArrayExpress--a public repository for microarray gene expression data at the EBI.	Nucleic Acids Res	2003
12225585	Design and implementation of microarray gene expression markup language (MAGE-ML).	Genome Biol	2002
12227734	Microarray data representation, annotation and storage.	Adv Biochem Eng Biotechnol	2002
11726920	Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.	Nat Genet	2001