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Author Details

Melissa M Matzke
Pacific Northwest National Laboratory
2005
28
19
PMIDPaper TitleJournal TitlePublished Year
27822525MPLEx: a Robust and Universal Protocol for Single-Sample Integrative Proteomic, Metabolomic, and Lipidomic Analyses.mSystems2016
25655199Data integration reveals key homeostatic mechanisms following low dose radiation exposure.Toxicol Appl Pharmacol2015
25855118Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics.J Proteome Res2015
25965799Proteomic analysis reveals down-regulation of surfactant protein B in murine type II pneumocytes infected with influenza A virus.Virology2015
24403597Advancing the high throughput identification of liver fibrosis protein signatures using multiplexed ion mobility spectrometry.Mol Cell Proteomics2014
25977790A comprehensive collection of systems biology data characterizing the host response to viral infection.Sci Data2014
25433089Bayesian proteoform modeling improves protein quantification of global proteomic measurements.Mol Cell Proteomics2014
25129695Bayesian Proteoform Modeling Improves Protein Quantification of Global Proteomic Measurements.Mol Cell Proteomics2014
24846384Pathogenic influenza viruses and coronaviruses utilize similar and contrasting approaches to control interferon-stimulated gene responses.mBio2014
24642900High and low doses of ionizing radiation induce different secretome profiles in a human skin model.PLoS One2014
24295867A halotyrosine antibody that detects increased protein modifications in asthma patients.J Immunol Methods2014
23019139A comparative analysis of computational approaches to relative protein quantification using peptide peak intensities in label-free LC-MS proteomics experiments.Proteomics2013
24223463A semiautomated framework for integrating expert knowledge into disease marker identification.Dis Markers2013
23919993Mechanisms of severe acute respiratory syndrome coronavirus-induced acute lung injury.mBio2013
23935999A network integration approach to predict conserved regulators related to pathogenicity of influenza and SARS-CoV respiratory viruses.PLoS One2013
23684558Comparative developmental toxicity of environmentally relevant oxygenated PAHs.Toxicol Appl Pharmacol2013
23477384Sequential projection pursuit principal component analysis--dealing with missing data associated with new -omics technologies.Biotechniques2013
23472838Association of carcinogenic polycyclic aromatic hydrocarbon emissions and smoking with lung cancer mortality rates on a global scale.Environ Sci Technol2013
23365422Release of severe acute respiratory syndrome coronavirus nuclear import block enhances host transcription in human lung cells.J Virol2013
22085489Transplacental carcinogenesis with dibenzo[def,p]chrysene (DBC): timing of maternal exposures determines target tissue response in offspring.Cancer Lett2012
22997050An approach for calculating a confidence interval from a single aquatic sample for monitoring hydrophobic organic contaminants.Environ Toxicol Chem2012
22690788Effect of Native American fish smoking methods on dietary exposure to polycyclic aromatic hydrocarbons and possible risks to human health.J Agric Food Chem2012
21917952Systems virology identifies a mitochondrial fatty acid oxidation enzyme, dodecenoyl coenzyme A delta isomerase, required for hepatitis C virus replication and likely pathogenesis.J Virol2011
22038874A statistical selection strategy for normalization procedures in LC-MS proteomics experiments through dataset-dependent ranking of normalization scaling factors.Proteomics2011
21852304Improved quality control processing of peptide-centric LC-MS proteomics data.Bioinformatics2011
20831241Combined statistical analyses of peptide intensities and peptide occurrences improves identification of significant peptides from MS-based proteomics data.J Proteome Res2010
18492049Evaluation of sampling tools for environmental sampling of bacterial endospores from porous and nonporous surfaces.J Appl Microbiol2008
16290168SVM-BALSA: remote homology detection based on Bayesian sequence alignment.Comput Biol Chem2005
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Collaborators

Katrina M Waters
Pacific Northwest National Laboratory
Co-authored papers 21
Bobbie-Jo M Webb-Robertson
Pacific Northwest National Laboratory
Co-authored papers 20
Thomas O Metz
Pacific Northwest National Laboratory
Co-authored papers 15
Richard D Smith
Pacific Northwest National Laboratory
Co-authored papers 14
Joel G Pounds
Co-authored papers 10
Jason E McDermott
Pacific Northwest National Laboratory
Co-authored papers 9
Anil K Shukla
Pacific Northwest National Laboratory
Co-authored papers 9
Jon M Jacobs
Pacific Northwest National Laboratory
Co-authored papers 7
Ralph S Baric
University of North Carolina
Co-authored papers 7
Michael G Katze
University of Washington
Co-authored papers 7
Karin D Rodland
Oregon Health and Science University
Co-authored papers 6
Amy C Sims
The University of North Carolina at Chapel Hill
Co-authored papers 6
Jean Chang
Center for Innate Immunity and Immune Disease, University of Washington
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Athena A Schepmoes
Pacific Northwest National Laboratory
Co-authored papers 5
Susan C Tilton
Oregon State University
Co-authored papers 5
Maria L Luna
Pacific Northwest National Laboratory
Co-authored papers 4
Marina A Gritsenko
Pacific Northwest National Laboratory
Co-authored papers 4
Lisa E Gralinski
University of North Carolina at Chapel Hill
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Vineet D Menachery
University of Texas Medical Branch
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Amie J Eisfeld
Influenza Research Institute, University of Wisconsin-Madison
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Yoshihiro Kawaoka
Influenza Research Institute, University of Wisconsin
Co-authored papers 3
Laurence Josset
Institut des Agents Infectieux, Infective Agents Institute, North Hospital Network
Co-authored papers 3
Chengjun Li
Harbin Veterinary Research Institute
Co-authored papers 3
Gabriele Neumann
Influenza Research Institute, University of Wisconsin-Madison
Co-authored papers 3
Casey Long
University of North Carolina at Chapel Hill
Co-authored papers 3
Jing Wang
Pacific Northwest National Laboratory
Co-authored papers 3
Matthew E Monroe
Pacific Northwest National Laboratory
Co-authored papers 3
Armand Bankhead
Rogel Cancer Center, University of Michigan ann arbor
Co-authored papers 3
Shannon K McWeeney
Oregon Health & Science University, University of California Berkeley
Co-authored papers 3
Sarah E Belisle
University of Washington
Co-authored papers 2
Release 1.2