Author details

Full Name

Barak Raveh

Affiliation

The Hebrew University of Jerusalem

ORCID

Career Start Year

2007

Papers

H Index

Expertise

CM4AI Collaborator

Andrej Sali (CM4AI)

PMID	Paper Title	Journal Title	Published Year
37066338	Dynamic molecular mechanism of the nuclear pore complex permeability barrier.	bioRxiv	2023
35681009	Mechanical force application to the nucleus regulates nucleocytoplasmic transport.	Nat Cell Biol	2022
34453000	Bayesian metamodeling of complex biological systems across varying representations.	Proc Natl Acad Sci U S A	2021
32483333	Macromolecular modeling and design in Rosetta: recent methods and frameworks.	Nat Methods	2020
29539637	Integrative structure and functional anatomy of a nuclear pore complex.	Nature	2018
28325822	Structural basis for chemokine recognition by a G protein-coupled receptor and implications for receptor activation.	Sci Signal	2017
27091992	Slide-and-exchange mechanism for rapid and selective transport through the nuclear pore complex.	Proc Natl Acad Sci U S A	2016
27697925	Simple rules for passive diffusion through the nuclear pore complex.	J Cell Biol	2016
24203340	Modeling of proteins and their assemblies with the Integrative Modeling Platform.	Methods Mol Biol	2014
25470426	A backdoor to the nucleus that runs in the family?	Structure	2014
24183815	Druggable protein-protein interactions--from hot spots to hot segments.	Curr Opin Chem Biol	2013
24138780	Peptide docking and structure-based characterization of peptide binding: from knowledge to know-how.	Curr Opin Struct Biol	2013
22323231	Modeling peptide-protein interactions.	Methods Mol Biol	2012
21071445	Autophosphorylation activates Dictyostelium myosin II heavy chain kinase A by providing a ligand for an allosteric binding site in the alpha-kinase domain.	J Biol Chem	2011
21622962	Rosetta FlexPepDock web server--high resolution modeling of peptide-protein interactions.	Nucleic Acids Res	2011
21572516	Rosetta FlexPepDock ab-initio: simultaneous folding, docking and refinement of peptides onto their receptors.	PLoS One	2011
20607702	Can self-inhibitory peptides be derived from the interfaces of globular protein-protein interactions?	Proteins	2010
21105670	Allosteric regulation of glycogen synthase kinase 3Î²: a theoretical study.	Biochemistry	2010
20455260	Sub-angstrom modeling of complexes between flexible peptides and globular proteins.	Proteins	2010
19247429	Rapid sampling of molecular motions with prior information constraints.	PLoS Comput Biol	2009
17657805	Prediction of transition metal-binding sites from apo protein structures.	Proteins	2008
18621834	Generation, comparison, and merging of pathways between protein conformations: gating in K-channels.	Biophys J	2008
17237086	Rediscovering secondary structures as network motifs--an unsupervised learning approach.	Bioinformatics	2007

1 - 23 of 23

Daniel J Saltzberg

University of California san francisco

Career Start Year 2014

Number of shared co-authors 10

Xingcheng Lin

Massachusetts Institute of Technology

Career Start Year 2014

Number of shared co-authors 0

Ezgi Karaca

Dokuz Eylul University

Career Start Year 2008

Number of shared co-authors 8

James S Fraser

University of California san francisco

Career Start Year 2006

Number of shared co-authors 11

Henry van den Bedem

University of California San Francisco

Career Start Year 2002

Number of shared co-authors 1

Matteo Dal Peraro

Institute of Bioengineering

Career Start Year 2001

Number of shared co-authors 4

Maya Topf

Leibniz-Institut fur Virologie (LIV)

Career Start Year 2001

Number of shared co-authors 11

Rommie E Amaro

University of California

Career Start Year 2001

Number of shared co-authors 1

David E Shaw

Columbia University

Career Start Year 2000

Number of shared co-authors 3

Matthew P Jacobson

Department of Pharmaceutical Chemistry, University of California san francisco

Career Start Year 1999

Number of shared co-authors 8

Jo??o P G L M Rodrigues

Stanford University

Career Start Year 1999

Number of shared co-authors 7

Georgios Skiniotis

Stanford University School of Medicine

Career Start Year 1999

Number of shared co-authors 1

Chaok Seok

Seoul National University

Career Start Year 1998

Number of shared co-authors 10

Nikolay V Dokholyan

Pennsylvania State University College of Medicine

Career Start Year 1998

Number of shared co-authors 6

Dmitri Beglov

Boston University

Career Start Year 1997

Number of shared co-authors 8

Marc F Lensink

University Lille, CNRS

Career Start Year 1996

Number of shared co-authors 7

Ivet Bahar

Laufer Center for Physical and Quantitative Biology, Stony Brook University

Career Start Year 1994

Number of shared co-authors 2

Huan-Xiang Zhou

University of Illinois Chicago

Career Start Year 1993

Number of shared co-authors 9

Giorgio Colombo

Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico

Career Start Year 1993

Number of shared co-authors 1

Alexandre M J J Bonvin

Bijvoet Center for Biomolecular Research, Utrecht University

Career Start Year 1991

Number of shared co-authors 16

Carlos J Camacho

University of Pittsburgh

Career Start Year 1990

Number of shared co-authors 5

Rebecca C Wade

Center for Molecular Biology (ZMBH), Heidelberg University

Career Start Year 1989

Number of shared co-authors 6

Paul A Bates

The Francis Crick Institute

Career Start Year 1989

Number of shared co-authors 9

Miriam Eisenstein

Weizmann Institute of Science

Career Start Year 1988

Number of shared co-authors 7

Michael Nilges

Institut Pasteur

Career Start Year 1986

Number of shared co-authors 12

Sandor Vajda

Boston University

Career Start Year 1982

Number of shared co-authors 11

Ruben Abagyan

Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California

Career Start Year 1981

Number of shared co-authors 1

Shoshana J Wodak

VIB-VUB Center for Structural Biology

Career Start Year 1975

Number of shared co-authors 10

Charles L Brooks

University of Michigan ann arbor

Career Start Year 1974

Number of shared co-authors 2

Michael Levitt

Stanford University

Career Start Year 1969

Number of shared co-authors 7

row(s) 1 - 30 of 30

Ora Schueler-Furman

Co-authored papers 11

Nir London

The Weizmann Institute of Science

Co-authored papers 11

Andrej Sali (CM4AI)

University of California San Francisco

Co-authored papers 6

Michael P Rout

The Rockefeller University

Co-authored papers 4

Javier Fernandez-Martinez

The Rockefeller University

Co-authored papers 2

Daniel Russel

University of California san francisco

Co-authored papers 2

Charles H Greenberg

University of California San Francisco

Co-authored papers 2

Seung Joong Kim

Korea Advanced Institute of Science and Technology (KAIST)

Co-authored papers 2

Riccardo Pellarin

CNRS UMR 5086 and Universite Claude Bernard Lyon 1

Co-authored papers 2

Brian T Chait

The Rockefeller University

Co-authored papers 2

Roxana Mironska

The Rockefeller University

Co-authored papers 2

Wenzhu Zhang

Dalian University of Technology

Co-authored papers 2

Jeremy O B Tempkin

University of California san francisco

Co-authored papers 2

Haim J Wolfson

Tel Aviv University

Co-authored papers 1

Jennifer L Gerton

Stowers Institute for Medical Research

Co-authored papers 1

Kala Bharath Pilla

Quantitative Biology Institute, University of California san francisco

Co-authored papers 1

Martin F Jarrold

Indiana University

Co-authored papers 1

Sagar D Khare

The State University of New Jersey

Co-authored papers 1

Junjie Wang

The Rockefeller University

Co-authored papers 1

Noah Ollikainen

California Institute of Technology

Co-authored papers 1

Manjunatha Shivaraju

Center for Regenerative Medicine, Massachusetts General Hospital

Co-authored papers 1

Ignacia Echeverria

University of California san francisco

Co-authored papers 1

Raymond C Stevens

iHuman Institute, ShanghaiTech University

Co-authored papers 1

Adam Mazur

University of Basel

Co-authored papers 1

David Cowburn

Albert Einstein College of Medicine

Co-authored papers 1

Steven J Ludtke

Baylor College of Medicine

Co-authored papers 1

Kate L White

Lawrence Berkeley National Laboratory

Co-authored papers 1

Javier A Vel??zquez-Muriel

University of California san francisco

Co-authored papers 1

Michael Jason de la Cruz

Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center

Co-authored papers 1

Thurston Herricks

Center for Global Infectious Disease Research, Seattle Children's Research Institute

Co-authored papers 1

1 - 30

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