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Author Details

Uttiya Basu
Columbia University Medical Center
2001
50
24
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36161469RNA-regulatory exosome complex suppresses an apoptotic program to confer erythroid progenitor cell survival in vivo.Blood Adv2023
37995687Nuclear RNA catabolism controls endogenous retroviruses, gene expression asymmetry, and dedifferentiation.Mol Cell2023
38049665Noncoding mutations cause super-enhancer retargeting resulting in protein synthesis dysregulation during B cell lymphoma progression.Nat Genet2023
37400674m<sup>6</sup>A RNA modification regulates innate lymphoid cell responses in a lineage-specific manner.Nat Immunol2023
35149861Publisher Correction: ERK1/2 phosphorylation predicts survival following anti-PD-1 immunotherapy in recurrent glioblastoma.Nat Cancer2022
35704185Identification of RNA-DNA Hybrids Associated with R-Loops at the IgH Switch Sequence in Activated B Cells.Methods Mol Biol2022
35658015RNA exosome drives early B cell development via noncoding RNA processing mechanisms.Sci Immunol2022
33479906Purification of Murine IL-10 <sup>+</sup> B Cells for Analyses of Biological Functions and Transcriptomics.Methods Mol Biol2021
33526923Noncoding RNA processing by DIS3 regulates chromosomal architecture and somatic hypermutation in B cells.Nat Genet2021
33526453Proteasomal Regulation of Mammalian SPT16 in Controlling Transcription.Mol Cell Biol2021
35121903ERK1/2 phosphorylation predicts survival following anti-PD-1 immunotherapy in recurrent glioblastoma.Nat Cancer2021
34426512A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells.Genome Res2021
34450044Mechanism of noncoding RNA-associated N<sup>6</sup>-methyladenosine recognition by an RNA processing complex during IgH DNA recombination.Mol Cell2021
33462115Post-transcriptional regulation by the exosome complex is required for cell survival and forebrain development via repression of P53 signaling.Development2021
32195383Effects of senataxin and RNA exosome on B-cell chromosomal integrity.Heliyon2020
32020081Regulation of long non-coding RNAs and genome dynamics by the RNA surveillance machinery.Nat Rev Mol Cell Biol2020
32034089Noncoding RNA transcription alters chromosomal topology to promote isotype-specific class switch recombination.Sci Immunol2020
32430477CD8<sup>+</sup> T-cell-Mediated Immunoediting Influences Genomic Evolution and Immune Evasion in Murine Gliomas.Clin Cancer Res2020
30755352Biology of RNA Surveillance in Development and Disease.Trends Cell Biol2019
30348657The Common Key to Class-Switch Recombination and Somatic Hypermutation: Discovery of AID and Its Role in Antibody Gene Diversification.J Immunol2018
30072987Expression and Function of Tetraspanins and Their Interacting Partners in B Cells.Front Immunol2018
28069372RNA Exosome and Non-coding RNA-Coupled Mechanisms in AID-Mediated Genomic Alterations.J Mol Biol2017
28087167Lingering Questions about Enhancer RNA and Enhancer Transcription-Coupled Genomic Instability.Trends Genet2017
28431250Nuclear Proximity of Mtr4 to RNA Exosome Restricts DNA Mutational Asymmetry.Cell2017
28475896The RNA Exosome Syncs IAV-RNAPII Transcription to Promote Viral Ribogenesis and Infectivity.Cell2017
29020613RNA Exosome Complex-Mediated Control of Redox Status in Pluripotent Stem Cells.Stem Cell Reports2017
26898111Mutations, kataegis and translocations in B cells: understanding AID promiscuous activity.Nat Rev Immunol2016
25957685RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity.Cell2015
26276622Malaria-Induced B Cell Genomic Instability.Cell2015
26527007Transcriptomics Identify CD9 as a Marker of Murine IL-10-Competent Regulatory B Cells.Cell Rep2015
26073986RNA Exosome Regulates AID DNA Mutator Activity in the B Cell Genome.Adv Immunol2015
24653725Ubiquitination events that regulate recombination of immunoglobulin Loci gene segments.Front Immunol2014
25119026Noncoding RNA transcription targets AID to divergently transcribed loci in B cells.Nature2014
23307864Regulation of AID, the B-cell genome mutator.Genes Dev2013
23964096E3-ubiquitin ligase Nedd4 determines the fate of AID-associated RNA polymerase II in B cells.Genes Dev2013
23584095Transcriptional stalling in B-lymphocytes: a mechanism for antibody diversification and maintenance of genomic integrity.Transcription2013
21255825The RNA exosome targets the AID cytidine deaminase to both strands of transcribed duplex DNA substrates.Cell2011
21572431The transcription factor BATF controls the global regulators of class-switch recombination in both B cells and T cells.Nat Immunol2011
21372789Recombinant retroviral production and infection of B cells.J Vis Exp2011
19010772Post-translational regulation of activation-induced cytidine deaminase.Philos Trans R Soc Lond B Biol Sci2009
19442251Regulation of activation-induced cytidine deaminase DNA deamination activity in B-cells by Ser38 phosphorylation.Biochem Soc Trans2009
19196992Integrity of the AID serine-38 phosphorylation site is critical for class switch recombination and somatic hypermutation in mice.Proc Natl Acad Sci U S A2009
18256024The Saccharomyces cerevisiae 60 S ribosome biogenesis factor Tif6p is regulated by Hrr25p-mediated phosphorylation.J Biol Chem2008
18951095Evolution of phosphorylation-dependent regulation of activation-induced cytidine deaminase.Mol Cell2008
17338181Regulation of activation induced deaminase via phosphorylation.Adv Exp Med Biol2007
17560275Evolution of the immunoglobulin heavy chain class switch recombination mechanism.Adv Immunol2007
16464563AID in somatic hypermutation and class switch recombination.Curr Opin Immunol2006
16251902The AID antibody diversification enzyme is regulated by protein kinase A phosphorylation.Nature2005
12917340Phosphorylation of mammalian eukaryotic translation initiation factor 6 and its Saccharomyces cerevisiae homologue Tif6p: evidence that phosphorylation of Tif6p regulates its nucleocytoplasmic distribution and is required for yeast cell growth.Mol Cell Biol2003
11238882The Saccharomyces cerevisiae TIF6 gene encoding translation initiation factor 6 is required for 60S ribosomal subunit biogenesis.Mol Cell Biol2001
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Collaborators

Brice Laffleur
Inserm UMR U 1236, University of Rennes, INSERM
Co-authored papers 13
Evangelos Pefanis
Regeneron Pharmaceuticals, Inc.
Co-authored papers 10
Raul Rabadan
Columbia University Vagelos College of Physicians and Surgeons
Co-authored papers 8
Jiguang Wang
The Hong Kong University of Science and Technology
Co-authored papers 7
Haiteng Deng
Co-authored papers 5
Adam M Sonabend
Northwestern University
Co-authored papers 3
Amy B Heimberger
Northwestern University Feinberg School of Medicine
Co-authored papers 3
Craig Horbinski
Co-authored papers 3
Roger Stupp
Northwestern University
Co-authored papers 2
Timothy F Cloughesy
David Geffen School of Medicine, University of California Los Angeles
Co-authored papers 2
Jacob H Hanna
Co-authored papers 2
Minji Byun
Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Daniel J Brat
Co-authored papers 2
Andrew X Chen
Columbia University
Co-authored papers 2
Laura Campisi
Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Ivan Marazzi
Center for Epigenetics and Metabolism, University of California irvine
Co-authored papers 2
Randy A Albrecht
Icahn School of Medicine at Mount Sinai
Co-authored papers 1
Colin N Dewey
Co-authored papers 1
Silvia De Rubeis
Co-authored papers 1
Judd F Hultquist
Northwestern University Feinberg School of Medicine
Co-authored papers 1
Matthew T Weirauch
University of Cincinnati College of Medicine
Co-authored papers 1
Ludivine Wacheul
Universite libre de Bruxelles (ULB)
Co-authored papers 1
Alexander Rialdi
Tisch Cancer Institute, Icahn School of Medicine at Mount Sinai
Co-authored papers 1
Robyn M Kaake
J. David Gladstone Institutes
Co-authored papers 1
Robert Sebra
Icahn School of Medicine at Mount Sinai
Co-authored papers 1
Hu Li
Co-authored papers 1
Oliver Elliott
Columbia University
Co-authored papers 1
Kelsey M Haas
J. David Gladstone Institutes
Co-authored papers 1
Denis L J Lafontaine
Universite libre de Bruxelles (ULB)
Co-authored papers 1
Brad R Rosenberg
Icahn School of Medicine at Mount Sinai
Co-authored papers 1
Release 1.2