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Author Details

Andrew E Firth
University of Cambridge
2003
119
46
Nevan J Krogan (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36629253Translation initiation of leaderless and polycistronic transcripts in mammalian mitochondria.Nucleic Acids Res2023
37622664Annual (2023) taxonomic update of RNA-directed RNA polymerase-encoding negative-sense RNA viruses (realm <i>Riboviria</i>: kingdom <i>Orthornavirae</i>: phylum <i>Negarnaviricota</i>).J Gen Virol2023
37014783Identification of RNA Virus-Derived RdRp Sequences in Publicly Available Transcriptomic Data Sets.Mol Biol Evol2023
35177605A late-stage assembly checkpoint of the human mitochondrial ribosome large subunit.Nat Commun2022
35444316Evaluating ribosomal frameshifting in CCR5 mRNA decoding.Nature2022
35671468<i>Turnip Mosaic Virus</i> Transcriptional Slippage Dynamics and Distribution in RNA Subpopulations.Mol Plant Microbe Interact2022
35790808Altered subgenomic RNA abundance provides unique insight into SARS-CoV-2 B.1.1.7/Alpha variant infections.Commun Biol2022
35714457Molecular characterization of emerging variants of PRRSV in the United States: new features of the -2/-1 programmed ribosomal frameshifting signal in the nsp2 region.Virology2022
364374282022 taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales.Arch Virol2022
35226596Ribosome profiling of porcine reproductive and respiratory syndrome virus reveals novel features of viral gene expression.Elife2022
35217614Evolutionarily conserved inhibitory uORFs sensitize <i>Hox</i> mRNA translation to start codon selection stringency.Proc Natl Acad Sci U S A2022
34138976Manipulation of the unfolded protein response: A pharmacological strategy against coronavirus infection.PLoS Pathog2021
33735221A swine arterivirus deubiquitinase stabilizes two major envelope proteins and promotes production of viral progeny.PLoS Pathog2021
33774510Conflicting and ambiguous names of overlapping ORFs in the SARS-CoV-2 genome: A homology-based resolution.Virology2021
34887415Structural and molecular basis for Cardiovirus 2A protein as a viral gene expression switch.Nat Commun2021
34398933pUL21 is a viral phosphatase adaptor that promotes herpes simplex virus replication and spread.PLoS Pathog2021
34751406Investigating molecular mechanisms of 2A-stimulated ribosomal pausing and frameshifting in Theilovirus.Nucleic Acids Res2021
33963053Targeting the Conserved Stem Loop 2 Motif in the SARS-CoV-2 Genome.J Virol2021
32138667Evidence for a novel overlapping coding sequence in POLG initiated at a CUG start codon.BMC Genet2020
31748389CpG Dinucleotides Inhibit HIV-1 Replication through Zinc Finger Antiviral Protein (ZAP)-Dependent and -Independent Mechanisms.J Virol2020
32064120A case for a negative-strand coding sequence in a group of positive-sense RNA viruses.Virus Evol2020
32792502A hidden gene in astroviruses encodes a viroporin.Nat Commun2020
32667280A putative new SARS-CoV protein, 3c, encoded in an ORF overlapping ORF3a.J Gen Virol2020
32284544An RNA thermoswitch regulates daytime growth in Arabidopsis.Nat Plants2020
30507373Propensity of a picornavirus polymerase to slip on potyvirus-derived transcriptional slippage sites.J Gen Virol2019
31243124Comparative Analysis of Gene Expression in Virulent and Attenuated Strains of Infectious Bronchitis Virus at Subcodon Resolution.J Virol2019
31180502Characterization of the stimulators of protein-directed ribosomal frameshifting in Theiler's murine encephalomyelitis virus.Nucleic Acids Res2019
31396629C6orf203 is an RNA-binding protein involved in mitochondrial protein synthesis.Nucleic Acids Res2019
31192271Enterovirus Competition Assay to Assess Replication Fitness.Bio Protoc2019
30835197ICTV Virus Taxonomy Profile: Solinviviridae.J Gen Virol2019
31167906Programmed -2/-1 Ribosomal Frameshifting in Simarteriviruses: an Evolutionarily Conserved Mechanism.J Virol2019
30904393Retapamulin-Assisted Ribosome Profiling Reveals the Alternative Bacterial Proteome.Mol Cell2019
30426216Discovery of a novel Tymoviridae-like virus in mosquitoes from Mexico.Arch Virol2019
30478287An upstream protein-coding region in enteroviruses modulates virus infection in gut epithelial cells.Nat Microbiol2019
30415391Discovery of three RNA viruses using ant transcriptomic datasets.Arch Virol2019
29325778Nonstructural proteins nsp2TF and nsp2N of porcine reproductive and respiratory syndrome virus (PRRSV) play important roles in suppressing host innate immune responses.Virology2018
29950409Transcriptional and Translational Landscape of Equine Torovirus.J Virol2018
30339683Overlapping genes and the proteins they encode differ significantly in their sequence composition from non-overlapping genes.PLoS One2018
30412047Detection of novel and recognized RNA viruses in mosquitoes from the Yucatan Peninsula of Mexico using metagenomics and characterization of their in vitro host ranges.J Gen Virol2018
29470543Translational autoregulation of BZW1 and BZW2 expression by modulating the stringency of start codon selection.PLoS One2018
29357872Ribosome profiling of the retrovirus murine leukemia virus.Retrovirology2018
29516246A barnavirus sequence mined from a transcriptome of the Antarctic pearlwort Colobanthus quitensis.Arch Virol2018
28918473Complete genome sequences of two insect-specific flaviviruses.Arch Virol2017
28366189ICTV Virus Taxonomy Profile: Dicistroviridae.J Gen Virol2017
28382900ICTV Virus Taxonomy Profile: Iflaviridae.J Gen Virol2017
28442579Avoidance of reporter assay distortions from fused dual reporters.RNA2017
29037253ASXL gain-of-function truncation mutants: defective and dysregulated forms of a natural ribosomal frameshifting product?Biol Direct2017
28572454Neurodevelopmental protein Musashi-1 interacts with the Zika genome and promotes viral replication.Science2017
28857036Polycipiviridae: a proposed new family of polycistronic picorna-like RNA viruses.J Gen Virol2017
28593994Protein-directed ribosomal frameshifting temporally regulates gene expression.Nat Commun2017
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Collaborators

Ian Goodfellow
University of Cambridge
Co-authored papers 3
Jens H Kuhn
National Institute of Allergy and Infectious Diseases, National Institutes of Health
Co-authored papers 3
Myra Hosmillo
University of Cambridge
Co-authored papers 2
Natalie J Thornburg
Centers for Disease Control and Prevention (CDC)
Co-authored papers 2
Angelo Pavesi
University of Parma
Co-authored papers 2
Steven B Bradfute
Co-authored papers 2
Janusz T Paweska
University of Pretoria
Co-authored papers 2
Nadine Biedenkopf
Institute of Virology, Philipps-University Marburg
Co-authored papers 2
Adolfo Garc??a-Sastre
Icahn School of Medicine at Mount Sinai
Co-authored papers 2
Gabriele Neumann
Influenza Research Institute, University of Wisconsin-Madison
Co-authored papers 2
Irwin Jungreis
Broad Institute of MIT and Harvard
Co-authored papers 2
Elke Mühlberger
Co-authored papers 2
Philippe Lemey
Rega Institute, Laboratory of Clinical and Evolutionary Virology
Co-authored papers 2
Martin Schwemmle
Institute of Virology, Medical Center - University of Freiburg
Co-authored papers 2
Manolis Kellis
Massachusetts Institute of Technology
Co-authored papers 2
Ekaterina Smirnova
Institut de Genetique et de Biologie Moleculaire et Cellulaire
Co-authored papers 1
Alexander E Gorbalenya
Leiden University Medical Center
Co-authored papers 1
Jay C Dunlap
Geisel School of Medicine at Dartmouth
Co-authored papers 1
Mark Borodovsky
Georgia Institute of Technology
Co-authored papers 1
Nevan J Krogan (CM4AI)
University of California San Francisco
Co-authored papers 1
Kei Sato
The Institute of Medical Science, The University of Tokyo
Co-authored papers 1
Noah Stern
Weizmann Institute of Science
Co-authored papers 1
Ivan V Kuzmin
University of Texas Medical Branch
Co-authored papers 1
John Ziebuhr
Institute of Medical Virology Justus Liebig University
Co-authored papers 1
Andrew A Peden
University of Sheffield
Co-authored papers 1
Samantha Hansford
The University of British Columbia
Co-authored papers 1
Chase W Nelson
Biodiversity Research Center, Taiwan Institute for Comparative Genomics
Co-authored papers 1
Dmitri I Svergun
King's College London BHF Centre for Research Excellence
Co-authored papers 1
Gerard Manning
Genentech Inc.
Co-authored papers 1
Yaara Finkel
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