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Author Details

Jesper Tegn??r
King Abdullah University of Science and Technology (KAUST)
1993
154
41
Emma Lundberg (CM4AI)
PMIDPaper TitleJournal TitlePublished Year
36761393Approximations of algorithmic and structural complexity validate cognitive-behavioral experimental results.Front Comput Neurosci2023
37628757DNA Methylation Signatures of Multiple Sclerosis Occur Independently of Known Genetic Risk and Are Primarily Attributed to B Cells and Monocytes.Int J Mol Sci2023
37406498Generation of myoglobin (MB)-knockout human embryonic stem cell (hESC) line (KAIMRCe002-A-1S) using CRISPR/Cas9 technology.Stem Cell Res2023
36761393Approximations of algorithmic and structural complexity validate cognitive-behavioral experimental results.Front Comput Neurosci2023
36735690scAEGAN: Unification of single-cell genomics data by adversarial learning of latent space correspondences.PLoS One2023
37628757DNA Methylation Signatures of Multiple Sclerosis Occur Independently of Known Genetic Risk and Are Primarily Attributed to B Cells and Monocytes.Int J Mol Sci2023
37406498Generation of myoglobin (MB)-knockout human embryonic stem cell (hESC) line (KAIMRCe002-A-1S) using CRISPR/Cas9 technology.Stem Cell Res2023
36735690scAEGAN: Unification of single-cell genomics data by adversarial learning of latent space correspondences.PLoS One2023
36106020RNA-sequencing and mass-spectrometry proteomic time-series analysis of T-cell differentiation identified multiple splice variants models that predicted validated protein biomarkers in inflammatory diseases.Front Mol Biosci2022
36106020RNA-sequencing and mass-spectrometry proteomic time-series analysis of T-cell differentiation identified multiple splice variants models that predicted validated protein biomarkers in inflammatory diseases.Front Mol Biosci2022
35494238Deconvolution of the hematopoietic stem cell microenvironment reveals a high degree of specialization and conservation.iScience2022
35430125Data-driven bioinformatics to disentangle cells within a tissue microenvironment.Trends Cell Biol2022
35430125Data-driven bioinformatics to disentangle cells within a tissue microenvironment.Trends Cell Biol2022
35494238Deconvolution of the hematopoietic stem cell microenvironment reveals a high degree of specialization and conservation.iScience2022
34285924Gene Regulatory Network of Human GM-CSF-Secreting T Helper Cells.J Immunol Res2021
33963011Predicting anti-PD-1 responders in malignant melanoma from the frequency of S100A9+ monocytes in the blood.J Immunother Cancer2021
33747045STATegra: Multi-Omics Data Integration - A Conceptual Scheme With a Bioinformatics Pipeline.Front Genet2021
34285924Gene Regulatory Network of Human GM-CSF-Secreting T Helper Cells.J Immunol Res2021
33682875DeepViral: prediction of novel virus-host interactions from protein sequences and infectious disease phenotypes.Bioinformatics2021
33733213Algorithmic Probability-Guided Machine Learning on Non-Differentiable Spaces.Front Artif Intell2021
33599920A robust machine learning framework to identify signatures for frailty: a nested case-control study in four aging European cohorts.Geroscience2021
34676774Deep characterization of paired chromatin and transcriptomes in four immune cell types from multiple sclerosis patients.Epigenomics2021
34599322DNA Transposon Expansion is Associated with Genome Size Increase in Mudminnows.Genome Biol Evol2021
33682875DeepViral: prediction of novel virus-host interactions from protein sequences and infectious disease phenotypes.Bioinformatics2021
33599920A robust machine learning framework to identify signatures for frailty: a nested case-control study in four aging European cohorts.Geroscience2021
33733213Algorithmic Probability-Guided Machine Learning on Non-Differentiable Spaces.Front Artif Intell2021
33747045STATegra: Multi-Omics Data Integration - A Conceptual Scheme With a Bioinformatics Pipeline.Front Genet2021
34599322DNA Transposon Expansion is Associated with Genome Size Increase in Mudminnows.Genome Biol Evol2021
34676774Deep characterization of paired chromatin and transcriptomes in four immune cell types from multiple sclerosis patients.Epigenomics2021
33963011Predicting anti-PD-1 responders in malignant melanoma from the frequency of S100A9+ monocytes in the blood.J Immunother Cancer2021
32117720Immunometabolic Network Interactions of the Kynurenine Pathway in Cutaneous Malignant Melanoma.Front Oncol2020
32117720Immunometabolic Network Interactions of the Kynurenine Pathway in Cutaneous Malignant Melanoma.Front Oncol2020
32051402Deriving disease modules from the compressed transcriptional space embedded in a deep autoencoder.Nat Commun2020
32555183Harmonization of quality metrics and power calculation in multi-omic studies.Nat Commun2020
33415102Elucidating the Role of Virulence Traits in the Survival of Pathogenic <i>E. coli</i> PI-7 Following Disinfection.Front Bioeng Biotechnol2020
33051686MYC as a driver of stochastic chromatin networks: implications for the fitness of cancer cells.Nucleic Acids Res2020
32051402Deriving disease modules from the compressed transcriptional space embedded in a deep autoencoder.Nat Commun2020
33051686MYC as a driver of stochastic chromatin networks: implications for the fitness of cancer cells.Nucleic Acids Res2020
33415102Elucidating the Role of Virulence Traits in the Survival of Pathogenic <i>E. coli</i> PI-7 Following Disinfection.Front Bioeng Biotechnol2020
32555183Harmonization of quality metrics and power calculation in multi-omic studies.Nat Commun2020
31053557Combining evidence from four immune cell types identifies DNA methylation patterns that implicate functionally distinct pathways during Multiple Sclerosis progression.EBioMedicine2019
31849937TcellSubC: An Atlas of the Subcellular Proteome of Human T Cells.Front Immunol2019
31692248Challenges in the Multivariate Analysis of Mass Cytometry Data: The Effect of Randomization.Cytometry A2019
31682608Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps.PLoS Comput Biol2019
33267274The Thermodynamics of Network Coding, and an Algorithmic Refinement of the Principle of Maximum Entropy.Entropy (Basel)2019
31541920An Algorithmic Information Calculus for Causal Discovery and Reprogramming Systems.iScience2019
30978178Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation.PLoS Biol2019
31434983Exhaustion of CD4+ T-cells mediated by the Kynurenine Pathway in Melanoma.Sci Rep2019
31427643Non-parametric combination analysis of multiple data types enables detection of novel regulatory mechanisms in T cells of multiple sclerosis patients.Sci Rep2019
31004050MAPK pathway and B cells overactivation in multiple sclerosis revealed by phosphoproteomics and genomic analysis.Proc Natl Acad Sci U S A2019
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Collaborators

David Gomez-Cabrero
King Abdullah University of Science and Technology
Co-authored papers 52
Angelika Schmidt
Institute for Immunology, Biomedical Center (BMC)
Co-authored papers 15
Maja Jagodic
Co-authored papers 12
Sten Grillner
Co-authored papers 12
Roland Nilsson
Karolinska Institutet
Co-authored papers 10
Ioannis Tsamardinos
Co-authored papers 9
Ana Conesa
Institute for Integrative Systems Biology, Spanish National Research Council (CSIC)
Co-authored papers 8
Fredrik Piehl
Co-authored papers 8
Imad Abugessaisa
RIKEN Center for Integrative Medical Sciences
Co-authored papers 8
Tomas Olsson
Co-authored papers 7
Vladimir B Bajic
King Abdullah University of Science and Technology (KAUST)
Co-authored papers 6
Hiromasa Morikawa
WPI Immunology Frontier Research Center, Osaka University
Co-authored papers 6
Timothy Ravasi
Okinawa Institute of Science and Technology Graduate University
Co-authored papers 6
Ingrid Kockum
Co-authored papers 6
Anders Hamsten
Co-authored papers 5
Albert Compte
Institut d'Investigacions Biomediques August Pi i Sunyer (IDIBAPS)
Co-authored papers 5
Bernard de Bono
Co-authored papers 4
Yoshihide Hayashizaki
Center for Integrative Medical Sciences
Co-authored papers 4
Shintaro Katayama
Folkhalsan Research Center
Co-authored papers 4
Boris Lenhard
MRC London Institute of Medical Sciences
Co-authored papers 4
Lars Klareskog
Co-authored papers 4
Pablo Villoslada
Hospital Clinic of Barcelona-Institut d'Investigacions
Co-authored papers 4
Harukazu Suzuki
RIKEN Center for Integrative Medical Sciences
Co-authored papers 4
Piero Carninci
RIKEN Center for Integrative Medical Sciences
Co-authored papers 4
David A Hume
Mater Research Institute-UQ, Translational Research Institute
Co-authored papers 4
Noriko Ninomiya
Japan Tobacco Inc.
Co-authored papers 3
Michihira Tagami
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Hideya Kawaji
RIKEN Center for Integrative Medical Sciences
Co-authored papers 3
Rohan D Teasdale
The University of Queensland
Co-authored papers 3
Winston Hide
Harvard Medical School
Co-authored papers 3
Release 1.2