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Author Details

Federico Marini
2012
55
19
PMIDPaper TitleJournal TitlePublished Year
37231147Modulation of cellular transcriptome and proteome composition by azidohomoalanine-implications on click chemistry-based secretome analysis.2023
37630204The Effect of Plastic-Related Compounds on Transcriptome-Wide Gene Expression on CYP2C19-Overexpressing HepG2 Cells.2023
37414930Commensal bacteria weaken the intestinal barrier by suppressing epithelial neuropilin-1 and Hedgehog signaling.2023
36701413Proteomics biomarker discovery for individualized prevention of familial pancreatic cancer using statistical learning.PLoS One2023
36997855Gene expression variability in long-term survivors of childhood cancer and cancer-free controls in response to ionizing irradiation.2023
37182169Identification of lncRNAs involved in response to ionizing radiation in fibroblasts of long-term survivors of childhood cancer and cancer-free controls.2023
35290110pH-degradable, bisphosphonate-loaded nanogels attenuate liver fibrosis by repolarization of M2-type macrophages.Proceedings of the National Academy of Sciences of the United States of America2022
35459909IRF4 deficiency vulnerates B-cell progeny for leukemogenesis via somatically acquired Jak3 mutations conferring IL-7 hypersensitivity.Cell Death and Differentiation2022
36345035Magnetique: an interactive web application to explore transcriptome signatures of heart failure.Journal of Translational Medicine2022
36153349Dithranol as novel co-adjuvant for non-invasive dermal vaccination.npj Vaccines2022
36142163Gut Microbiota Functional Traits, Blood pH, and Anti-GAD Antibodies Concur in the Clinical Characterization of T1D at Onset.International Journal of Molecular Sciences2022
36068491Radiation-response in primary fibroblasts of long-term survivors of childhood cancer with and without second primary neoplasms: the KiKme study.Molecular Medicine2022
35483785Dose response to methylating agents in the γH2AX, SCE and colony formation assays: Effect of MGMT and MPG overexpression.Mutation Research - Genetic Toxicology and Environmental Mutagenesis2022
35862309Ten simple rules to host an inclusive conference.PLoS Computational Biology2022
36124800SimBu: bias-aware simulation of bulk RNA-seq data with variable cell-type composition.2022
36430485Circulating Inflammatory, Mitochondrial Dysfunction, and Senescence-Related Markers in Older Adults with Physical Frailty and Sarcopenia: A BIOSPHERE Exploratory Study.International Journal of Molecular Sciences2022
35661311Quantitative proteomics analysis reveals core and variable tick salivary proteins at the tick-vertebrate host interface.Molecular Ecology2022
35467799Interactive and Reproducible Workflows for Exploring and Modeling RNA-seq Data with pcaExplorer, Ideal, and GeneTonic.Current Protocols2022
35302851ARAF suppresses ERBB3 expression and metastasis in a subset of lung cancers.Science advances2022
34930224cbpManager: a web application to streamline the integration of clinical and genomic data in cBioPortal to support the Molecular Tumor Board.BMC Medical Informatics and Decision Making2021
32976578TREND-DB-a transcriptome-wide atlas of the dynamic landscape of alternative polyadenylation.Nucleic Acids Research2021
33070159ERK3/MAPK6 is required for KRAS-mediated NSCLC tumorigenesis.Cancer Gene Therapy2021
33168935Correction: ERK3/MAPK6 is required for KRAS-mediated NSCLC tumorigenesis.Cancer Gene Therapy2021
34830991Identification of an Immunogenic Medulloblastoma-Specific Fusion Involving and .Cancers2021
34376481Integrated longitudinal immunophenotypic, transcriptional and repertoire analyses delineate immune responses in COVID-19 patients.Sci Immunol2021
34949163GeneTonic: an R/Bioconductor package for streamlining the interpretation of RNA-seq data.BMC Bioinformatics2021
32788578Bacterial polyphosphates interfere with the innate host defense to infection.Nature Communications2020
32023471Microglial A20 Protects the Brain from CD8 T-Cell-Mediated Immunopathology.Cell Reports2020
32314963ERK3/MAPK6 controls IL-8 production and chemotaxis.eLife2020
31792435Orchestrating single-cell analysis with Bioconductor.Nat Methods2020
31827272Publisher Correction: Orchestrating single-cell analysis with Bioconductor.Nat Methods2020
33317447annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions.BMC Bioinformatics2020
32651669Interleukin-1 promotes autoimmune neuroinflammation by suppressing endothelial heme oxygenase-1 at the blood-brain barrier.Acta Neuropathologica2020
33297942ideal: an R/Bioconductor package for interactive differential expression analysis.BMC Bioinformatics2020
31195976pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components.BMC Bioinformatics2019
31844089IL-17 CD8 T cell suppression by dimethyl fumarate associates with clinical response in multiple sclerosis.Nature Communications2019
29733920Evaluation of the apparent diffusion coefficient in patients with recurrent glioblastoma under treatment with bevacizumab with radiographic pseudoresponse.Journal of Neuroradiology2019
30705266Promoter-proximal pausing mediated by the exon junction complex regulates splicing.Nature Communications2019
31541031Myeloid cell-synthesized coagulation factor X dampens antitumor immunity.Science immunology2019
31331983TAF-ChIP: an ultra-low input approach for genome-wide chromatin immunoprecipitation assay.Life Sci Alliance2019
30127295Novel DNA Methylation Sites Influence Expression in Relation to Smoking.Biomolecules2018
30552333Transcriptome 3'end organization by PCF11 links alternative polyadenylation to formation and neuronal differentiation of neuroblastoma.Nature Communications2018
30154105Health-Relevant Phenotypes in the Offspring of Mice Given CAR Activators Prior to Pregnancy.Drug Metabolism and Disposition2018
30002819iSEE: Interactive SummarizedExperiment Explorer.F1000Research2018
30519591Uncontrolled Diabetes Mellitus Has No Major Influence on the Platelet Transcriptome.BioMed Research International2018
28668406Vessel shape alterations of the vertebrobasilar arteries in Mucopolysaccharidosis type IVa (Morquio A) patients.European Journal of Radiology2017
28555422Ischemic stroke and intracranial hemorrhage in patients with recurrent glioblastoma multiforme, treated with bevacizumab.Journal of Neuro-Oncology2017
28497800Reciprocal regulation of the Il9 locus by counteracting activities of transcription factors IRF1 and IRF4.Nat Commun2017
28846116Targeting prohibitins with chemical ligands inhibits KRAS-mediated lung tumours.Oncogene2017
28414306Targeting prohibitins with chemical ligands inhibits KRAS-mediated lung tumours.Oncogene2017
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